Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : HNV

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 43


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O6 O O6 N N N 0 3.091 3.067 1.525
2 C6 C C6 N N N 0 3.84 1.858 1.666
3 C5 C C5 R N N 0 3.205 0.761 0.809
4 O5 O O5 N N N 0 3.31 1.113 -0.572
5 C4 C C4 S N N 0 3.932 -0.563 1.054
6 O4 O O4 N N N 0 3.779 -0.947 2.423
7 C3 C C3 S N N 0 3.33 -1.643 0.15
8 O3 O O3 N N N 0 4.051 -2.865 0.319
9 C2 C C2 S N N 0 3.43 -1.186 -1.309
10 O2 O O2 N N N 0 4.805 -1.047 -1.672
11 C1 C C1 S N N 0 2.722 0.163 -1.462
12 O1 O O1 N N N 0 1.336 0.012 -1.149
13 C7 C C7 N N N 0 0.538 1.152 -1.475
14 C8 C C8 N N N 0 -0.864 0.89 -1.113
15 C9 C C9 N N N 0 -1.983 0.68 -0.825
16 C10 C C10 N Y N 0 -3.347 0.425 -0.473
17 C15 C C15 N Y N 0 -4.322 1.399 -0.697
18 C14 C C14 N Y N 0 -5.634 1.149 -0.358
19 C13 C C13 N Y N 0 -5.988 -0.069 0.207
20 O7 O O7 N N N 0 -7.282 -0.311 0.54
21 C16 C C16 N N N 0 -7.576 -1.585 1.118
22 C12 C C12 N Y N 0 -5.021 -1.04 0.432
23 C11 C C11 N Y N 0 -3.707 -0.8 0.09
24 HO6 H H6 N N Y 0 3.437 3.807 2.041
25 H61 H H61C N N N 0 4.866 2.027 1.337
26 H62 H H62C N N N 0 3.839 1.55 2.711
27 H5 H H5 N N N 0 2.154 0.654 1.078
28 H4 H H4 N N N 0 4.991 -0.445 0.826
29 H1 H H1 N N N 0 2.826 0.513 -2.489
30 HO4 H HA N N Y 0 4.216 -1.779 2.649
31 H3 H H3 N N N 0 2.283 -1.798 0.414
32 HO3 H HB N N Y 0 3.723 -3.594 -0.226
33 H2 H H2 N N N 0 2.955 -1.924 -1.955
34 HO2 H HC N N Y 0 4.943 -0.76 -2.585
35 H71C H H71C N N N 0 0.9 2.018 -0.921
36 H72C H H72C N N N 0 0.607 1.35 -2.544
37 H15 H H15 N N N 0 -4.048 2.347 -1.136
38 H11 H H11 N N N 0 -2.957 -1.558 0.261
39 H14 H H14 N N N 0 -6.389 1.902 -0.531
40 H12 H H12 N N N 0 -5.299 -1.987 0.872
41 H161 H H161 N N N 0 -7.008 -1.705 2.041
42 H162 H H162 N N N 0 -8.642 -1.648 1.336
43 H163 H H163 N N N 0 -7.301 -2.374 0.417