Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : HEM

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 75


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 CHA C CHA N N N 0 -2.161 -0.125 0.49
2 CHB C CHB N N N 0 1.458 -3.419 0.306
3 CHC C CHC N N N 0 4.701 0.169 -0.069
4 CHD C CHD N N N 0 1.075 3.46 0.018
5 C1A C C1A N Y N 0 -1.436 -1.305 0.38
6 C2A C C2A N Y N 0 -2.015 -2.587 0.32
7 C3A C C3A N Y N 0 -1.009 -3.5 0.27
8 C4A C C4A N Y N 0 0.216 -2.803 0.298
9 CMA C CMA N N N 0 -1.175 -4.996 0.197
10 CAA C CAA N N N 0 -3.49 -2.893 0.314
11 CBA C CBA N N N 0 -3.998 -2.926 -1.129
12 CGA C CGA N N N 0 -5.473 -3.232 -1.136
13 O1A O O1A N N N 0 -6.059 -3.405 -0.094
14 O2A O O2A N N N 0 -6.137 -3.311 -2.3
15 C1B C C1B N N N 0 2.664 -2.707 0.308
16 C2B C C2B N N N 0 3.937 -3.328 0.418
17 CAB C CAB N N N 0 6.339 -2.497 0.365
18 C3B C C3B N N N 0 4.874 -2.341 0.314
19 C4B C C4B N N N 0 4.117 -1.079 0.139
20 CMB C CMB N N N 0 4.203 -4.798 0.613
21 CBB C CBB N N N 0 6.935 -3.419 -0.385
22 C1C C C1C N Y N 0 3.964 1.345 -0.174
23 C2C C C2C N Y N 0 4.531 2.601 -0.445
24 C3C C C3C N Y N 0 3.51 3.536 -0.437
25 C4C C C4C N Y N 0 2.304 2.846 -0.139
26 CMC C CMC N N N 0 5.991 2.88 -0.697
27 CAC C CAC N N N 0 3.649 4.981 -0.692
28 CBC C CBC N N N 0 4.201 5.407 -1.823
29 C1D C C1D N N N 0 -0.102 2.753 0.298
30 C2D C C2D N N N 0 -1.382 3.388 0.641
31 C3D C C3D N N N 0 -2.283 2.389 0.774
32 C4D C C4D N N N 0 -1.561 1.137 0.511
33 CMD C CMD N N N 0 -1.639 4.863 0.811
34 CAD C CAD N N N 0 -3.741 2.532 1.123
35 CBD C CBD N N N 0 -4.573 2.563 -0.16
36 CGD C CGD N N N 0 -6.032 2.706 0.189
37 O1D O O1D N N N 0 -6.372 2.776 1.347
38 O2D O O2D N N N 0 -6.954 2.755 -0.785
39 NA N NA N Y N 0 -0.068 -1.456 0.321
40 NB N NB N N N 0 2.82 -1.386 0.207
41 NC N NC N Y N 0 2.604 1.506 -0.033
42 ND N ND N N N 0 -0.276 1.431 0.298
43 FE FE FE N N N 0 1.01 0.157 -0.06
44 HHB H HHB N N N 0 1.498 -4.508 0.309
45 HHC H HHC N N N 0 5.786 0.229 -0.153
46 HHD H HHD N N N 0 1.018 4.543 -0.083
47 HMA H HMA N N N 0 -1.22 -5.306 -0.847
48 HMAA H HMAA N N N 0 -0.328 -5.48 0.683
49 HMAB H HMAB N N N 0 -2.097 -5.285 0.702
50 HAA H HAA N N N 0 -3.662 -3.862 0.782
51 HAAA H HAAA N N N 0 -4.024 -2.121 0.869
52 HBA H HBA N N N 0 -3.825 -1.956 -1.597
53 HBAA H HBAA N N N 0 -3.464 -3.697 -1.684
54 HMB H HMB N N N 0 3.256 -5.336 0.66
55 HMBA H HMBA N N N 0 4.794 -5.175 -0.222
56 HMBB H HMBB N N N 0 4.752 -4.948 1.543
57 HAB H HAB N N N 0 6.927 -1.863 1.011
58 HBB H HBB N N N 0 7.994 -3.6 -0.277
59 HBBA H HBBA N N N 0 6.36 -3.987 -1.102
60 HMC H HMC N N N 0 6.554 1.949 -0.639
61 HMCA H HMCA N N N 0 6.11 3.316 -1.689
62 HMCB H HMCB N N N 0 6.362 3.578 0.053
63 HAC H HAC N N N 0 3.303 5.694 0.042
64 HBC H HBC N N N 0 4.614 4.696 -2.523
65 HBCA H HBCA N N N 0 4.235 6.464 -2.043
66 HADA H HADA N N N 0 -3.893 3.459 1.677
67 HMD H HMD N N N 0 -0.715 5.415 0.639
68 HMDA H HMDA N N N 0 -2.394 5.185 0.094
69 HMDB H HMDB N N N 0 -1.994 5.055 1.824
70 HAD H HAD N N N 0 -4.052 1.687 1.738
71 HBD H HBD N N N 0 -4.262 3.408 -0.775
72 HBDA H HBDA N N N 0 -4.421 1.636 -0.714
73 H2A H H2A N N N 0 -7.082 -3.51 -2.254
74 H2D H H2D N N N 0 -7.877 2.847 -0.512
75 HHA H HHA N N N 0 -3.246 -0.188 0.567