data_HEM
#
_chem_comp.id HEM
_chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE'
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C34 H32 Fe N4 O4'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms HEME
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag Y
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces MHM
_chem_comp.formula_weight 616.487
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HEM
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3IA3
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HEM CHA CHA C 0 1 N N N N N N 2.748 -19.531 39.896 -2.161 -0.125 0.490 CHA HEM 1
HEM CHB CHB C 0 1 N N N N N N 3.258 -17.744 35.477 1.458 -3.419 0.306 CHB HEM 2
HEM CHC CHC C 0 1 N N N N N N 1.703 -21.900 33.637 4.701 0.169 -0.069 CHC HEM 3
HEM CHD CHD C 0 1 N N N N N N 1.149 -23.677 38.059 1.075 3.460 0.018 CHD HEM 4
HEM C1A C1A C 0 1 Y N N N N N 3.031 -18.673 38.872 -1.436 -1.305 0.380 C1A HEM 5
HEM C2A C2A C 0 1 Y N N N N N 3.578 -17.325 39.013 -2.015 -2.587 0.320 C2A HEM 6
HEM C3A C3A C 0 1 Y N N N N N 3.705 -16.820 37.785 -1.009 -3.500 0.270 C3A HEM 7
HEM C4A C4A C 0 1 Y N N N N N 3.256 -17.863 36.862 0.216 -2.803 0.298 C4A HEM 8
HEM CMA CMA C 0 1 N N N N N N 4.227 -15.469 37.393 -1.175 -4.996 0.197 CMA HEM 9
HEM CAA CAA C 0 1 N N N N N N 3.945 -16.670 40.296 -3.490 -2.893 0.314 CAA HEM 10
HEM CBA CBA C 0 1 N N N N N N 5.391 -17.138 40.581 -3.998 -2.926 -1.129 CBA HEM 11
HEM CGA CGA C 0 1 N N N N N N 6.095 -16.663 41.825 -5.473 -3.232 -1.136 CGA HEM 12
HEM O1A O1A O 0 1 N N N N N N 7.098 -15.928 41.683 -6.059 -3.405 -0.094 O1A HEM 13
HEM O2A O2A O 0 1 N N N N N N 5.657 -17.040 42.940 -6.137 -3.311 -2.300 O2A HEM 14
HEM C1B C1B C 0 1 N N N N N N 2.888 -18.698 34.579 2.664 -2.707 0.308 C1B HEM 15
HEM C2B C2B C 0 1 N N N N N N 2.933 -18.535 33.146 3.937 -3.328 0.418 C2B HEM 16
HEM C3B C3B C 0 1 N N N N N N 2.499 -19.716 32.632 4.874 -2.341 0.314 C3B HEM 17
HEM C4B C4B C 0 1 N N N N N N 2.187 -20.580 33.743 4.117 -1.079 0.139 C4B HEM 18
HEM CMB CMB C 0 1 N N N N N N 3.391 -17.290 32.422 4.203 -4.798 0.613 CMB HEM 19
HEM CAB CAB C 0 1 N N N N N N 2.345 -20.140 31.217 6.339 -2.497 0.365 CAB HEM 20
HEM CBB CBB C 0 1 N N N N N N 1.755 -19.492 30.233 6.935 -3.419 -0.385 CBB HEM 21
HEM C1C C1C C 0 1 Y N N N N N 1.395 -22.786 34.659 3.964 1.345 -0.174 C1C HEM 22
HEM C2C C2C C 0 1 Y N N N N N 0.854 -24.130 34.500 4.531 2.601 -0.445 C2C HEM 23
HEM C3C C3C C 0 1 Y N N N N N 0.689 -24.626 35.757 3.510 3.536 -0.437 C3C HEM 24
HEM C4C C4C C 0 1 Y N N N N N 1.139 -23.583 36.674 2.304 2.846 -0.139 C4C HEM 25
HEM CMC CMC C 0 1 N N N N N N 0.550 -24.782 33.175 5.991 2.880 -0.697 CMC HEM 26
HEM CAC CAC C 0 1 N N N N N N 0.164 -25.943 36.196 3.649 4.981 -0.692 CAC HEM 27
HEM CBC CBC C 0 1 N N N N N N 0.498 -27.158 35.750 4.201 5.407 -1.823 CBC HEM 28
HEM C1D C1D C 0 1 N N N N N N 1.550 -22.718 38.980 -0.102 2.753 0.298 C1D HEM 29
HEM C2D C2D C 0 1 N N N N N N 1.513 -22.879 40.415 -1.382 3.388 0.641 C2D HEM 30
HEM C3D C3D C 0 1 N N N N N N 1.951 -21.691 40.929 -2.283 2.389 0.774 C3D HEM 31
HEM C4D C4D C 0 1 N N N N N N 2.277 -20.826 39.811 -1.561 1.137 0.511 C4D HEM 32
HEM CMD CMD C 0 1 N N N N N N 1.055 -24.094 41.156 -1.639 4.863 0.811 CMD HEM 33
HEM CAD CAD C 0 1 N N N N N N 2.048 -21.326 42.352 -3.741 2.532 1.123 CAD HEM 34
HEM CBD CBD C 0 1 N N N N N N 0.741 -20.498 42.530 -4.573 2.563 -0.160 CBD HEM 35
HEM CGD CGD C 0 1 N N N N N N 0.578 -19.987 43.892 -6.032 2.706 0.189 CGD HEM 36
HEM O1D O1D O 0 1 N N N N N N 1.387 -19.103 44.303 -6.372 2.776 1.347 O1D HEM 37
HEM O2D O2D O 0 1 N N N N N N -0.401 -20.468 44.537 -6.954 2.755 -0.785 O2D HEM 38
HEM NA NA N 0 1 Y N N N N N 2.863 -18.969 37.554 -0.068 -1.456 0.321 NA HEM 39
HEM NB NB N 0 1 N N N N N N 2.439 -19.944 34.911 2.820 -1.386 0.207 NB HEM 40
HEM NC NC N 0 1 Y N N N N N 1.537 -22.509 35.976 2.604 1.506 -0.033 NC HEM 41
HEM ND ND N 0 1 N N N N N N 2.008 -21.465 38.663 -0.276 1.431 0.298 ND HEM 42
HEM FE FE FE 0 0 N N N N N N 2.196 -20.749 36.814 1.010 0.157 -0.060 FE HEM 43
HEM HHB HHB H 0 1 N N N N N N 3.587 -16.798 35.072 1.498 -4.508 0.309 HHB HEM 44
HEM HHC HHC H 0 1 N N N N N N 1.553 -22.268 32.633 5.786 0.229 -0.153 HHC HEM 45
HEM HHD HHD H 0 1 N N N N N N 0.802 -24.613 38.472 1.018 4.543 -0.083 HHD HEM 46
HEM HMA HMA H 0 1 N N N N N N 5.316 -15.524 37.249 -1.220 -5.306 -0.847 HMA HEM 47
HEM HMAA HMAA H 0 0 N N N N N N 3.749 -15.149 36.455 -0.328 -5.480 0.683 HMAA HEM 48
HEM HMAB HMAB H 0 0 N N N N N N 3.998 -14.743 38.187 -2.097 -5.285 0.702 HMAB HEM 49
HEM HAA HAA H 0 1 N N N N N N 3.905 -15.575 40.197 -3.662 -3.862 0.782 HAA HEM 50
HEM HAAA HAAA H 0 0 N N N N N N 3.268 -16.991 41.102 -4.024 -2.121 0.869 HAAA HEM 51
HEM HBA HBA H 0 1 N N N N N N 5.368 -18.237 40.627 -3.825 -1.956 -1.597 HBA HEM 52
HEM HBAA HBAA H 0 0 N N N N N N 6.004 -16.819 39.725 -3.464 -3.697 -1.684 HBAA HEM 53
HEM HMB HMB H 0 1 N N N N N N 3.319 -17.449 31.336 3.256 -5.336 0.660 HMB HEM 54
HEM HMBA HMBA H 0 0 N N N N N N 2.753 -16.442 32.711 4.794 -5.175 -0.222 HMBA HEM 55
HEM HMBB HMBB H 0 0 N N N N N N 4.435 -17.072 32.692 4.752 -4.948 1.543 HMBB HEM 56
HEM HAB HAB H 0 1 N N N N N N 2.770 -21.100 30.963 6.927 -1.863 1.011 HAB HEM 57
HEM HBB HBB H 0 1 N N N N N N 1.719 -19.927 29.245 7.994 -3.600 -0.277 HBB HEM 58
HEM HBBA HBBA H 0 0 N N N N N N 1.308 -18.526 30.414 6.360 -3.987 -1.102 HBBA HEM 59
HEM HMC HMC H 0 1 N N N N N N 0.153 -25.793 33.346 6.554 1.949 -0.639 HMC HEM 60
HEM HMCA HMCA H 0 0 N N N N N N -0.196 -24.182 32.634 6.110 3.316 -1.689 HMCA HEM 61
HEM HMCB HMCB H 0 0 N N N N N N 1.472 -24.846 32.578 6.362 3.578 0.053 HMCB HEM 62
HEM HAC HAC H 0 1 N N N N N N -0.583 -25.916 36.975 3.303 5.694 0.042 HAC HEM 63
HEM HBC HBC H 0 1 N N N N N N 0.027 -28.035 36.169 4.614 4.696 -2.523 HBC HEM 64
HEM HBCA HBCA H 0 0 N N N N N N 1.239 -27.263 34.971 4.235 6.464 -2.043 HBCA HEM 65
HEM HMD HMD H 0 1 N N N N N N 1.142 -23.919 42.238 -0.715 5.415 0.639 HMD HEM 66
HEM HMDA HMDA H 0 0 N N N N N N 0.006 -24.304 40.902 -2.394 5.185 0.094 HMDA HEM 67
HEM HMDB HMDB H 0 0 N N N N N N 1.680 -24.954 40.872 -1.994 5.055 1.824 HMDB HEM 68
HEM HAD HAD H 0 1 N N N N N N 2.055 -22.216 42.999 -4.052 1.687 1.738 HAD HEM 69
HEM HADA HADA H 0 0 N N N N N N 2.943 -20.719 42.554 -3.893 3.459 1.677 HADA HEM 70
HEM HBD HBD H 0 1 N N N N N N 0.767 -19.646 41.835 -4.262 3.408 -0.775 HBD HEM 71
HEM HBDA HBDA H 0 0 N N N N N N -0.119 -21.141 42.290 -4.421 1.636 -0.714 HBDA HEM 72
HEM H2A H2A H 0 1 N N N N N N 6.201 -16.682 43.632 -7.082 -3.510 -2.254 H2A HEM 73
HEM H2D H2D H 0 1 N N N N N N -0.445 -20.063 45.395 -7.877 2.847 -0.512 H2D HEM 74
HEM HHA HHA H 0 1 N N N N N N 2.913 -19.150 40.893 -3.246 -0.188 0.567 HHA HEM 75
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HEM CHA C1A SING N N 1
HEM CHA C4D DOUB N N 2
HEM CHA HHA SING N N 3
HEM CHB C4A SING N N 4
HEM CHB C1B DOUB N N 5
HEM CHB HHB SING N N 6
HEM CHC C4B SING N N 7
HEM CHC C1C DOUB N N 8
HEM CHC HHC SING N N 9
HEM CHD C4C DOUB N N 10
HEM CHD C1D SING N N 11
HEM CHD HHD SING N N 12
HEM C1A C2A DOUB Y N 13
HEM C1A NA SING Y N 14
HEM C2A C3A SING Y N 15
HEM C2A CAA SING N N 16
HEM C3A C4A DOUB Y N 17
HEM C3A CMA SING N N 18
HEM C4A NA SING Y N 19
HEM CMA HMA SING N N 20
HEM CMA HMAA SING N N 21
HEM CMA HMAB SING N N 22
HEM CAA CBA SING N N 23
HEM CAA HAA SING N N 24
HEM CAA HAAA SING N N 25
HEM CBA CGA SING N N 26
HEM CBA HBA SING N N 27
HEM CBA HBAA SING N N 28
HEM CGA O1A DOUB N N 29
HEM CGA O2A SING N N 30
HEM C1B C2B SING N N 31
HEM C1B NB SING N N 32
HEM C2B C3B DOUB N N 33
HEM C2B CMB SING N N 34
HEM C3B C4B SING N N 35
HEM C3B CAB SING N N 36
HEM C4B NB DOUB N N 37
HEM CMB HMB SING N N 38
HEM CMB HMBA SING N N 39
HEM CMB HMBB SING N N 40
HEM CAB CBB DOUB N N 41
HEM CAB HAB SING N N 42
HEM CBB HBB SING N N 43
HEM CBB HBBA SING N N 44
HEM C1C C2C SING Y N 45
HEM C1C NC SING Y N 46
HEM C2C C3C DOUB Y N 47
HEM C2C CMC SING N N 48
HEM C3C C4C SING Y N 49
HEM C3C CAC SING N N 50
HEM C4C NC SING Y N 51
HEM CMC HMC SING N N 52
HEM CMC HMCA SING N N 53
HEM CMC HMCB SING N N 54
HEM CAC CBC DOUB N N 55
HEM CAC HAC SING N N 56
HEM CBC HBC SING N N 57
HEM CBC HBCA SING N N 58
HEM C1D C2D SING N N 59
HEM C1D ND DOUB N N 60
HEM C2D C3D DOUB N N 61
HEM C2D CMD SING N N 62
HEM C3D C4D SING N N 63
HEM C3D CAD SING N N 64
HEM C4D ND SING N N 65
HEM CMD HMD SING N N 66
HEM CMD HMDA SING N N 67
HEM CMD HMDB SING N N 68
HEM CAD CBD SING N N 69
HEM CAD HAD SING N N 70
HEM CAD HADA SING N N 71
HEM CBD CGD SING N N 72
HEM CBD HBD SING N N 73
HEM CBD HBDA SING N N 74
HEM CGD O1D DOUB N N 75
HEM CGD O2D SING N N 76
HEM O2A H2A SING N N 77
HEM O2D H2D SING N N 78
HEM FE NA SING N N 79
HEM FE NB SING N N 80
HEM FE NC SING N N 81
HEM FE ND SING N N 82
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HEM SMILES ACDLabs 12.01 'C=1c3c(c(c4C=C5C(=C(C=6C=C7C(=C(C8=CC=2C(=C(C=1N=2[Fe](n34)(N5=6)N78)CCC(=O)O)C)\C=C)C)\C=C)C)C)CCC(=O)O'
HEM InChI InChI 1.03 'InChI=1S/C34H34N4O4.Fe/c1-7-21-17(3)25-13-26-19(5)23(9-11-33(39)40)31(37-26)16-32-24(10-12-34(41)42)20(6)28(38-32)15-30-22(8-2)18(4)27(36-30)14-29(21)35-25;/h7-8,13-16H,1-2,9-12H2,3-6H3,(H4,35,36,37,38,39,40,41,42);/q;+2/p-2/b25-13-,26-13-,27-14-,28-15-,29-14-,30-15-,31-16-,32-16-;'
HEM InChIKey InChI 1.03 KABFMIBPWCXCRK-RGGAHWMASA-L
HEM SMILES_CANONICAL CACTVS 3.385 'CC1=C(CCC(O)=O)C2=Cc3n4[Fe]5|6|N2=C1C=c7n5c(=CC8=N|6C(=Cc4c(C)c3CCC(O)=O)C(=C8C=C)C)c(C)c7C=C'
HEM SMILES CACTVS 3.385 'CC1=C(CCC(O)=O)C2=Cc3n4[Fe]5|6|N2=C1C=c7n5c(=CC8=N|6C(=Cc4c(C)c3CCC(O)=O)C(=C8C=C)C)c(C)c7C=C'
HEM SMILES_CANONICAL 'OpenEye OEToolkits' 1.7.6 'Cc1c2n3c(c1CCC(=O)O)C=C4C(=C(C5=[N]4[Fe]36[N]7=C(C=C8N6C(=C5)C(=C8C)C=C)C(=C(C7=C2)C)C=C)C)CCC(=O)O'
HEM SMILES 'OpenEye OEToolkits' 1.7.6 'Cc1c2n3c(c1CCC(=O)O)C=C4C(=C(C5=[N]4[Fe]36[N]7=C(C=C8N6C(=C5)C(=C8C)C=C)C(=C(C7=C2)C)C=C)C)CCC(=O)O'
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
HEM 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.6.1 '3-[(5Z,10Z,14Z,19Z)-18-(2-carboxyethyl)-8,13-bis(ethenyl)-3,7,12,17-tetramethyl-21,23-dihydroporphyrin-2-yl]propanoic acid'
HEM 'SYSTEMATIC NAME' ACDLabs 12.01 "[3,3'-(7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~)dipropanoato(2-)]iron"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HEM 'Create component' 1999-07-08 RCSB
HEM 'Other modification' 2016-01-20 RCSB
HEM 'Modify synonyms' 2020-06-05 PDBE
HEM 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id HEM
_pdbx_chem_comp_synonyms.name HEME
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
loop_
_pdbx_chem_comp_pcm.pcm_id
_pdbx_chem_comp_pcm.comp_id
_pdbx_chem_comp_pcm.modified_residue_id
_pdbx_chem_comp_pcm.type
_pdbx_chem_comp_pcm.category
_pdbx_chem_comp_pcm.position
_pdbx_chem_comp_pcm.polypeptide_position
_pdbx_chem_comp_pcm.comp_id_linking_atom
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession
1 HEM ASP None Heme/heme-like 'Amino-acid side chain' 'Any position' CMD OD2 ? ?
2 HEM CYS None Heme/heme-like 'Amino-acid side chain' 'Any position' CAB SG ? ?
3 HEM CYS None Heme/heme-like 'Amino-acid side chain' 'Any position' CAC SG ? ?
4 HEM GLU None Heme/heme-like 'Amino-acid side chain' 'Any position' CMB OE2 ? ?
5 HEM GLU None Heme/heme-like 'Amino-acid side chain' 'Any position' CMD OE2 ? ?
6 HEM HIS None Heme/heme-like 'Amino-acid side chain' 'Any position' CAB NE2 ? ?
7 HEM MET None Heme/heme-like 'Amino-acid side chain' 'Any position' CBB SD ? ?
#
_pdbe_chem_comp_drugbank_details.comp_id HEM
_pdbe_chem_comp_drugbank_details.drugbank_id DB18267
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Ferroheme
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 14875-96-8
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
HEM HEME wwPDB ?
HEM Ferroheme DrugBank ?
HEM Heme DrugBank ?
HEM 'HEME B' DrugBank ?
HEM 'HEME IRON' DrugBank ?
HEM PROTOHEME DrugBank ?
HEM 'PROTOHEME IX' DrugBank ?
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
HEM DB18267 'Nitric oxide synthase, inducible' Humans P35228 unknown 1
HEM DB18267 'Cytochrome P450 3A4' Humans P08684 unknown 2
HEM DB18267 'Nitric oxide synthase 1' Humans P29475 unknown 3
HEM DB18267 'Hemoglobin subunit alpha' Humans P69905 unknown 4
HEM DB18267 'Nitric oxide synthase 3' Humans P29474 unknown 5
HEM DB18267 'Polyunsaturated fatty acid 5-lipoxygenase' Humans P09917 unknown 6
HEM DB18267 'Cystathionine beta-synthase' Humans P35520 unknown 7
HEM DB18267 'Prostaglandin G/H synthase 2' Humans P35354 unknown 8
HEM DB18267 'Prostaglandin G/H synthase 1' Humans P23219 unknown 9
HEM DB18267 'Heme oxygenase 1' Humans P09601 unknown 10
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
HEM CHA C -3.758 0.000 1
HEM CHB C 0.000 3.796 2
HEM CHC C 3.796 0.000 3
HEM CHD C 0.000 -3.796 4
HEM C1A C -2.999 1.291 5
HEM C2A C -3.682 2.657 6
HEM C3A C -2.619 3.720 7
HEM C4A C -1.291 3.037 8
HEM CMA C -2.855 5.205 9
HEM CAA C -5.190 2.908 10
HEM CBA C -5.717 4.312 11
HEM CGA C -7.196 4.558 12
HEM O1A O -8.149 3.399 13
HEM O2A O -7.723 5.962 14
HEM C1B C 1.329 3.037 15
HEM C2B C 2.658 3.720 16
HEM C3B C 3.758 2.657 17
HEM C4B C 3.037 1.291 18
HEM CMB C 2.886 5.197 19
HEM CAB C 5.265 2.923 20
HEM CBB C 6.230 1.774 21
HEM C1C C 3.037 -1.291 22
HEM C2C C 3.758 -2.657 23
HEM C3C C 2.658 -3.720 24
HEM C4C C 1.329 -3.037 25
HEM CMC C 5.288 -2.877 26
HEM CAC C 2.871 -5.236 27
HEM CBC C 1.689 -6.159 28
HEM C1D C -1.291 -3.037 29
HEM C2D C -2.619 -3.720 30
HEM C3D C -3.682 -2.657 31
HEM C4D C -2.999 -1.291 32
HEM CMD C -2.848 -5.197 33
HEM CAD C -5.167 -2.892 34
HEM CBD C -5.705 -4.293 35
HEM CGD C -7.186 -4.527 36
HEM O1D O -8.130 -3.362 37
HEM O2D O -7.724 -5.928 38
HEM NA N -1.518 1.556 39
HEM NB N 1.556 1.556 40
HEM NC N 1.556 -1.556 41
HEM ND N -1.518 -1.556 42
HEM FE Fe 0.000 0.000 43
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
HEM CHA C1A SINGLE ENDDOWNRIGHT 1
HEM CHA C4D DOUBLE NONE 2
HEM CHB C4A SINGLE ENDDOWNRIGHT 3
HEM CHB C1B DOUBLE NONE 4
HEM CHC C4B SINGLE ENDDOWNRIGHT 5
HEM CHC C1C DOUBLE NONE 6
HEM CHD C4C DOUBLE NONE 7
HEM CHD C1D SINGLE ENDDOWNRIGHT 8
HEM C1A C2A DOUBLE NONE 9
HEM C1A NA SINGLE NONE 10
HEM C2A C3A SINGLE NONE 11
HEM C2A CAA SINGLE NONE 12
HEM C3A C4A DOUBLE NONE 13
HEM C3A CMA SINGLE NONE 14
HEM C4A NA SINGLE NONE 15
HEM CAA CBA SINGLE NONE 16
HEM CBA CGA SINGLE NONE 17
HEM CGA O1A DOUBLE NONE 18
HEM CGA O2A SINGLE NONE 19
HEM C1B C2B SINGLE ENDUPRIGHT 20
HEM C1B NB SINGLE ENDDOWNRIGHT 21
HEM C2B C3B DOUBLE NONE 22
HEM C2B CMB SINGLE NONE 23
HEM C3B C4B SINGLE NONE 24
HEM C3B CAB SINGLE NONE 25
HEM C4B NB DOUBLE NONE 26
HEM CAB CBB DOUBLE NONE 27
HEM C1C C2C SINGLE ENDUPRIGHT 28
HEM C1C NC SINGLE ENDDOWNRIGHT 29
HEM C2C C3C DOUBLE NONE 30
HEM C2C CMC SINGLE NONE 31
HEM C3C C4C SINGLE ENDDOWNRIGHT 32
HEM C3C CAC SINGLE NONE 33
HEM C4C NC SINGLE ENDDOWNRIGHT 34
HEM CAC CBC DOUBLE NONE 35
HEM C1D C2D SINGLE NONE 36
HEM C1D ND DOUBLE NONE 37
HEM C2D C3D DOUBLE NONE 38
HEM C2D CMD SINGLE NONE 39
HEM C3D C4D SINGLE ENDDOWNRIGHT 40
HEM C3D CAD SINGLE NONE 41
HEM C4D ND SINGLE ENDDOWNRIGHT 42
HEM CAD CBD SINGLE NONE 43
HEM CBD CGD SINGLE NONE 44
HEM CGD O1D DOUBLE NONE 45
HEM CGD O2D SINGLE NONE 46
HEM FE NA SINGLE NONE 47
HEM NB FE DATIVE NONE 48
HEM FE NC SINGLE NONE 49
HEM ND FE DATIVE NONE 50
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
HEM MurckoScaffold S1 scaffold 'C1=C/C2=C/c3ccc4[n]3[Fe@SP2]35<-[N]2=C1/C=c1/cc/c([n]13)=C/C1=[N]->5/C(=C\4)C=C1' 'InChI=1S/C20H12N4.Fe/c1-2-14-10-16-5-6-18(23-16)12-20-8-7-19(24-20)11-17-4-3-15(22-17)9-13(1)21-14;/h1-12H;/q-2;+2/b13-9-,14-10-,15-9-,16-10-,17-11-,18-12-,19-11-,20-12-;' XVFTZEQSXCJEIQ-QDJBTJTOSA-N
HEM porphin-like F1 fragment C1~C~C2~C~C3~C~C~C(~C~C4~C~C~C(~C~C5~C~C~C(~C~C~1~N~2)~N~5)~N~4)~N~3 ? ?
HEM pyrrole F2 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
HEM CHA S1 1
HEM CHB S1 1
HEM CHC S1 1
HEM CHD S1 1
HEM C1A S1 1
HEM C2A S1 1
HEM C3A S1 1
HEM C4A S1 1
HEM C1B S1 1
HEM C2B S1 1
HEM C3B S1 1
HEM C4B S1 1
HEM C1C S1 1
HEM C2C S1 1
HEM C3C S1 1
HEM C4C S1 1
HEM C1D S1 1
HEM C2D S1 1
HEM C3D S1 1
HEM C4D S1 1
HEM NA S1 1
HEM NB S1 1
HEM NC S1 1
HEM ND S1 1
HEM FE S1 1
HEM C2A F1 1
HEM C3A F1 1
HEM C4A F1 1
HEM CHB F1 1
HEM C1B F1 1
HEM NB F1 1
HEM C4B F1 1
HEM C3B F1 1
HEM C2B F1 1
HEM CHC F1 1
HEM C1C F1 1
HEM NC F1 1
HEM C4C F1 1
HEM CHD F1 1
HEM C1D F1 1
HEM ND F1 1
HEM C4D F1 1
HEM CHA F1 1
HEM C1A F1 1
HEM NA F1 1
HEM C3D F1 1
HEM C2D F1 1
HEM C3C F1 1
HEM C2C F1 1
HEM C1A F2 1
HEM C2A F2 1
HEM C3A F2 1
HEM C4A F2 1
HEM NA F2 1
HEM C1C F2 2
HEM C2C F2 2
HEM C3C F2 2
HEM C4C F2 2
HEM NC F2 2
#
_pdbe_chem_comp_rdkit_properties.comp_id HEM
_pdbe_chem_comp_rdkit_properties.exactmw 616.177
_pdbe_chem_comp_rdkit_properties.amw 616.499
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 43
_pdbe_chem_comp_rdkit_properties.NumAtoms 75
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.235
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 6
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 6
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 296.337
_pdbe_chem_comp_rdkit_properties.tpsa 96.260
_pdbe_chem_comp_rdkit_properties.CrippenClogP 6.210
_pdbe_chem_comp_rdkit_properties.CrippenMR 165.273
_pdbe_chem_comp_rdkit_properties.chi0v 21.880
_pdbe_chem_comp_rdkit_properties.chi1v 13.713
_pdbe_chem_comp_rdkit_properties.chi2v 11.671
_pdbe_chem_comp_rdkit_properties.chi3v 11.671
_pdbe_chem_comp_rdkit_properties.chi4v 10.931
_pdbe_chem_comp_rdkit_properties.chi0n 52.775
_pdbe_chem_comp_rdkit_properties.chi1n 27.554
_pdbe_chem_comp_rdkit_properties.chi2n 7.046
_pdbe_chem_comp_rdkit_properties.chi3n 7.046
_pdbe_chem_comp_rdkit_properties.chi4n 5.475
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.461
_pdbe_chem_comp_rdkit_properties.kappa1 9.033
_pdbe_chem_comp_rdkit_properties.kappa2 8.336
_pdbe_chem_comp_rdkit_properties.kappa3 2.826
_pdbe_chem_comp_rdkit_properties.Phi 1.751
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
HEM UniChem DrugBank DB18267
HEM UniChem ChEBI 17627
HEM UniChem ChEBI 26355
HEM UniChem fdasrs 42VZT0U6YR
HEM UniChem SureChEMBL SCHEMBL4008
HEM UniChem HMDB HMDB0003178
HEM UniChem MetaboLights MTBLC17627
HEM UniChem MetaboLights MTBLC26355
HEM UniChem BRENDA 135197
HEM UniChem BRENDA 143348
HEM UniChem BRENDA 144129
HEM UniChem BRENDA 1517
HEM UniChem BRENDA 211503
HEM UniChem BRENDA 228485
HEM UniChem BRENDA 228486
HEM UniChem BRENDA 30062
HEM UniChem BRENDA 3360
HEM UniChem BRENDA 48
HEM UniChem BRENDA 822
HEM UniChem BRENDA 8254
HEM UniChem MedChemExpress HY-111914A
HEM UniChem 'Probes And Drugs' PD158908
HEM UniChem 'EPA CompTox Dashboard' DTXSID90889386
HEM UniChem 'PubChem TPHARMA' 14912106
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
HEM CHA 2.282 1.308 0.239 ETKDGv3 1
HEM CHB -2.369 2.176 1.955 ETKDGv3 2
HEM CHC -3.794 -1.932 -0.216 ETKDGv3 3
HEM CHD 0.597 -2.720 -1.900 ETKDGv3 4
HEM C1A 1.149 1.901 0.955 ETKDGv3 5
HEM C2A 1.198 3.022 1.682 ETKDGv3 6
HEM C3A -0.166 3.293 2.139 ETKDGv3 7
HEM C4A -0.936 2.302 1.690 ETKDGv3 8
HEM CMA -0.615 4.451 2.983 ETKDGv3 9
HEM CAA 2.399 3.905 1.928 ETKDGv3 10
HEM CBA 2.471 5.064 0.927 ETKDGv3 11
HEM CGA 2.796 4.584 -0.454 ETKDGv3 12
HEM O1A 1.875 4.415 -1.297 ETKDGv3 13
HEM O2A 4.112 4.287 -0.792 ETKDGv3 14
HEM C1B -3.122 1.164 1.523 ETKDGv3 15
HEM C2B -4.546 1.014 1.815 ETKDGv3 16
HEM C3B -4.900 -0.160 1.310 ETKDGv3 17
HEM C4B -3.722 -0.723 0.620 ETKDGv3 18
HEM CMB -5.378 1.902 2.698 ETKDGv3 19
HEM CAB -6.226 -0.791 1.480 ETKDGv3 20
HEM CBB -6.362 -2.073 1.810 ETKDGv3 21
HEM C1C -2.766 -2.458 -0.873 ETKDGv3 22
HEM C2C -2.815 -3.667 -1.711 ETKDGv3 23
HEM C3C -1.573 -3.914 -2.145 ETKDGv3 24
HEM C4C -0.702 -2.837 -1.650 ETKDGv3 25
HEM CMC -4.052 -4.457 -2.041 ETKDGv3 26
HEM CAC -1.135 -5.029 -3.015 ETKDGv3 27
HEM CBC -1.535 -6.285 -2.830 ETKDGv3 28
HEM C1D 1.447 -1.625 -1.406 ETKDGv3 29
HEM C2D 2.881 -1.530 -1.728 ETKDGv3 30
HEM C3D 3.331 -0.390 -1.219 ETKDGv3 31
HEM C4D 2.204 0.203 -0.500 ETKDGv3 32
HEM CMD 3.671 -2.507 -2.553 ETKDGv3 33
HEM CAD 4.734 0.155 -1.319 ETKDGv3 34
HEM CBD 5.568 -0.283 -0.114 ETKDGv3 35
HEM CGD 6.945 0.296 -0.194 ETKDGv3 36
HEM O1D 7.870 -0.349 -0.756 ETKDGv3 37
HEM O2D 7.191 1.568 0.313 ETKDGv3 38
HEM NA -0.173 1.380 0.926 ETKDGv3 39
HEM NB -2.675 0.041 0.758 ETKDGv3 40
HEM NC -1.449 -1.939 -0.849 ETKDGv3 41
HEM ND 1.047 -0.619 -0.681 ETKDGv3 42
HEM FE -0.813 -0.283 0.036 ETKDGv3 43
HEM HHB -2.838 2.946 2.553 ETKDGv3 44
HEM HHC -4.757 -2.410 -0.315 ETKDGv3 45
HEM HHD 1.064 -3.470 -2.521 ETKDGv3 46
HEM HMA -1.476 4.958 2.501 ETKDGv3 47
HEM HMAA -0.917 4.085 3.987 ETKDGv3 48
HEM HMAB 0.193 5.199 3.105 ETKDGv3 49
HEM HAA 2.329 4.325 2.953 ETKDGv3 50
HEM HAAA 3.344 3.323 1.915 ETKDGv3 51
HEM HBA 1.510 5.624 0.919 ETKDGv3 52
HEM HBAA 3.265 5.770 1.251 ETKDGv3 53
HEM HMB -5.176 2.967 2.462 ETKDGv3 54
HEM HMBA -5.124 1.708 3.761 ETKDGv3 55
HEM HMBB -6.462 1.729 2.548 ETKDGv3 56
HEM HAB -7.116 -0.180 1.408 ETKDGv3 57
HEM HBB -7.349 -2.492 1.956 ETKDGv3 58
HEM HBBA -5.500 -2.709 1.965 ETKDGv3 59
HEM HMC -3.941 -4.989 -3.009 ETKDGv3 60
HEM HMCA -4.925 -3.782 -2.145 ETKDGv3 61
HEM HMCB -4.251 -5.191 -1.233 ETKDGv3 62
HEM HAC -0.396 -4.831 -3.782 ETKDGv3 63
HEM HBC -1.158 -7.071 -3.471 ETKDGv3 64
HEM HBCA -2.211 -6.550 -2.028 ETKDGv3 65
HEM HMD 3.351 -3.545 -2.330 ETKDGv3 66
HEM HMDA 4.755 -2.448 -2.323 ETKDGv3 67
HEM HMDB 3.512 -2.296 -3.631 ETKDGv3 68
HEM HAD 4.697 1.264 -1.372 ETKDGv3 69
HEM HADA 5.215 -0.187 -2.260 ETKDGv3 70
HEM HBD 5.633 -1.393 -0.081 ETKDGv3 71
HEM HBDA 5.087 0.062 0.827 ETKDGv3 72
HEM H2A 4.346 3.940 -1.715 ETKDGv3 73
HEM H2D 8.113 1.982 0.251 ETKDGv3 74
HEM HHA 3.237 1.804 0.308 ETKDGv3 75
#