Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GY7

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 56


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 4.54 -1.059 -1.587
2 C10 C C2 N Y N 0 -6.121 -1.502 0.266
3 C11 C C3 N Y N 0 -6.386 -2.311 -0.823
4 C12 C C4 N Y N 0 -7.689 -2.667 -1.119
5 C13 C C5 N Y N 0 -8.726 -2.213 -0.326
6 C14 C C6 N Y N 0 -8.461 -1.403 0.762
7 C15 C C7 N Y N 0 -7.158 -1.053 1.062
8 C16 C C8 N N N 0 -0.432 3.091 -0.767
9 C17 C C9 N N N 0 0.986 3.362 -0.499
10 C18 C C10 N N N 0 2.394 1.421 2.978
11 C19 C C11 N N N 0 3.769 0.732 3.18
12 C2 C C12 N Y N 0 3.868 -1.605 -0.488
13 C20 C C13 N N N 0 4.125 0.319 1.73
14 C21 C C14 N Y N 0 4.319 -2.806 0.071
15 C22 C C15 N Y N 0 5.421 -3.444 -0.467
16 C23 C C16 N Y N 0 6.079 -2.897 -1.554
17 C24 C C17 N Y N 0 5.637 -1.712 -2.116
18 C3 C C18 N N N 0 2.693 -0.918 0.08
19 C4 C C19 S N N 0 1.751 0.587 1.85
20 C5 C C20 N N N 0 0.99 1.491 0.914
21 C6 C C21 N N N 0 -1.011 2.003 -0.133
22 C7 C C22 N N N 0 -2.438 1.681 -0.359
23 C8 C C23 N N N 0 -4.349 0.185 -0.14
24 C9 C C24 N N N 0 -4.701 -1.114 0.588
25 F1 F F1 N N N 0 4.113 0.1 -2.134
26 F2 F F2 N N N 0 3.678 -3.342 1.133
27 N1 N N1 N N N 0 2.842 -0.08 1.125
28 N2 N N2 N N N 0 -0.266 1.242 0.689
29 N3 N N3 N N N 0 -2.969 0.562 0.174
30 N4 N N4 N N N 0 1.639 2.537 0.348
31 O1 O O1 N N N 0 1.59 -1.107 -0.395
32 O2 O O2 N N N 0 -3.131 2.424 -1.026
33 O3 O O3 N N N 0 -1.152 3.88 -1.603
34 O4 O O4 N N N 0 1.556 4.303 -1.025
35 H1 H H1 N N N 0 -5.576 -2.666 -1.442
36 H2 H H2 N N N 0 -7.896 -3.299 -1.97
37 H3 H H3 N N N 0 -9.744 -2.49 -0.558
38 H4 H H4 N N N 0 -9.272 -1.048 1.381
39 H5 H H5 N N N 0 -6.951 -0.42 1.913
40 H6 H H6 N N N 0 1.796 1.364 3.888
41 H7 H H7 N N N 0 2.524 2.458 2.669
42 H8 H H8 N N N 0 4.502 1.433 3.578
43 H9 H H9 N N N 0 3.677 -0.143 3.824
44 H10 H H10 N N N 0 4.553 1.164 1.19
45 H11 H H11 N N N 0 4.821 -0.52 1.735
46 H12 H H12 N N N 0 5.77 -4.371 -0.037
47 H13 H H13 N N N 0 6.939 -3.4 -1.969
48 H14 H H14 N N N 0 6.157 -1.293 -2.964
49 H15 H H15 N N N 0 1.077 -0.156 2.276
50 H16 H H16 N N N 0 -4.451 0.038 -1.215
51 H17 H H17 N N N 0 -5.025 0.977 0.184
52 H18 H H18 N N N 0 -4.6 -0.967 1.663
53 H22 H H22 N N N 0 -0.646 4.609 -1.989
54 H19 H H19 N N N 0 -4.026 -1.906 0.265
55 H20 H H20 N N N 0 -2.437 0.007 0.765
56 H21 H H21 N N N 0 2.578 2.687 0.543