data_GY7
#
_chem_comp.id GY7
_chem_comp.name
2-[(2S)-1-(2,6-difluorobenzene-1-carbonyl)pyrrolidin-2-yl]-5-hydroxy-6-oxo-N-(2-phenylethyl)-1,6-dihydropyrimidine-4-carboxamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H22 F2 N4 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms SRI-29731
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-07-11
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 468.453
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code GY7
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5WE9
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GY7 C1 C1 C 0 1 Y N N N N N -10.301 82.028 13.862 4.540 -1.059 -1.587 C1 GY7 1
GY7 C10 C2 C 0 1 Y N N N N N -7.801 84.423 18.854 -6.121 -1.502 0.266 C10 GY7 2
GY7 C11 C3 C 0 1 Y N N N N N -6.709 83.607 19.116 -6.386 -2.311 -0.823 C11 GY7 3
GY7 C12 C4 C 0 1 Y N N N N N -5.489 83.832 18.499 -7.689 -2.667 -1.119 C12 GY7 4
GY7 C13 C5 C 0 1 Y N N N N N -5.346 84.873 17.611 -8.726 -2.213 -0.326 C13 GY7 5
GY7 C14 C6 C 0 1 Y N N N N N -6.417 85.691 17.340 -8.461 -1.403 0.762 C14 GY7 6
GY7 C15 C7 C 0 1 Y N N N N N -7.639 85.468 17.957 -7.158 -1.053 1.062 C15 GY7 7
GY7 C16 C8 C 0 1 N N N N N N -10.094 78.830 16.982 -0.432 3.091 -0.767 C16 GY7 8
GY7 C17 C9 C 0 1 N N N N N N -9.523 77.946 16.066 0.986 3.362 -0.499 C17 GY7 9
GY7 C18 C10 C 0 1 N N N N N N -5.465 80.095 15.344 2.394 1.421 2.978 C18 GY7 10
GY7 C19 C11 C 0 1 N N N N N N -5.420 81.390 16.138 3.769 0.732 3.180 C19 GY7 11
GY7 C2 C12 C 0 1 Y N N N N N -9.117 81.561 13.311 3.868 -1.605 -0.488 C2 GY7 12
GY7 C20 C13 C 0 1 N N N N N N -5.893 82.396 15.113 4.125 0.319 1.730 C20 GY7 13
GY7 C21 C14 C 0 1 Y N N N N N -9.211 80.434 12.509 4.319 -2.806 0.071 C21 GY7 14
GY7 C22 C15 C 0 1 Y N N N N N -10.399 79.781 12.282 5.421 -3.444 -0.467 C22 GY7 15
GY7 C23 C16 C 0 1 Y N N N N N -11.540 80.276 12.870 6.079 -2.897 -1.554 C23 GY7 16
GY7 C24 C17 C 0 1 Y N N N N N -11.509 81.402 13.666 5.637 -1.712 -2.116 C24 GY7 17
GY7 C3 C18 C 0 1 N N N N N N -7.802 82.244 13.549 2.693 -0.918 0.080 C3 GY7 18
GY7 C4 C19 C 0 1 N N S N N N -6.838 80.197 14.664 1.751 0.587 1.850 C4 GY7 19
GY7 C5 C20 C 0 1 N N N N N N -7.997 79.684 15.490 0.990 1.491 0.914 C5 GY7 20
GY7 C6 C21 C 0 1 N N N N N N -9.586 80.091 17.116 -1.011 2.003 -0.133 C6 GY7 21
GY7 C7 C22 C 0 1 N N N N N N -10.138 81.100 18.088 -2.438 1.681 -0.359 C7 GY7 22
GY7 C8 C23 C 0 1 N N N N N N -10.139 83.492 18.641 -4.349 0.185 -0.140 C8 GY7 23
GY7 C9 C24 C 0 1 N N N N N N -9.130 84.178 19.533 -4.701 -1.114 0.588 C9 GY7 24
GY7 F1 F1 F 0 1 N N N N N N -10.283 83.132 14.642 4.113 0.100 -2.134 F1 GY7 25
GY7 F2 F2 F 0 1 N N N N N N -8.091 79.934 11.940 3.678 -3.342 1.133 F2 GY7 26
GY7 N1 N1 N 0 1 N N N N N N -6.919 81.646 14.366 2.842 -0.080 1.125 N1 GY7 27
GY7 N2 N2 N 0 1 N N N N N N -8.554 80.518 16.368 -0.266 1.242 0.689 N2 GY7 28
GY7 N3 N3 N 0 1 N N N N N N -9.587 82.313 17.981 -2.969 0.562 0.174 N3 GY7 29
GY7 N4 N4 N 0 1 N N N N N N -8.465 78.421 15.322 1.639 2.537 0.348 N4 GY7 30
GY7 O1 O1 O 0 1 N N N N N N -7.581 83.352 13.071 1.590 -1.107 -0.395 O1 GY7 31
GY7 O2 O2 O 0 1 N N N N N N -11.018 80.802 18.902 -3.131 2.424 -1.026 O2 GY7 32
GY7 O3 O3 O 0 1 N N N N N N -11.133 78.339 17.675 -1.152 3.880 -1.603 O3 GY7 33
GY7 O4 O4 O 0 1 N N N N N N -9.918 76.779 15.898 1.556 4.303 -1.025 O4 GY7 34
GY7 H1 H1 H 0 1 N N N N N N -6.812 82.786 19.810 -5.576 -2.666 -1.442 H1 GY7 35
GY7 H2 H2 H 0 1 N N N N N N -4.649 83.189 18.716 -7.896 -3.299 -1.970 H2 GY7 36
GY7 H3 H3 H 0 1 N N N N N N -4.396 85.047 17.128 -9.744 -2.490 -0.558 H3 GY7 37
GY7 H4 H4 H 0 1 N N N N N N -6.307 86.510 16.645 -9.272 -1.048 1.381 H4 GY7 38
GY7 H5 H5 H 0 1 N N N N N N -8.474 86.116 17.736 -6.951 -0.420 1.913 H5 GY7 39
GY7 H6 H6 H 0 1 N N N N N N -5.408 79.217 16.004 1.796 1.364 3.888 H6 GY7 40
GY7 H7 H7 H 0 1 N N N N N N -4.653 80.050 14.604 2.524 2.458 2.669 H7 GY7 41
GY7 H8 H8 H 0 1 N N N N N N -4.399 81.616 16.479 4.502 1.433 3.578 H8 GY7 42
GY7 H9 H9 H 0 1 N N N N N N -6.096 81.352 17.005 3.677 -0.143 3.824 H9 GY7 43
GY7 H10 H10 H 0 1 N N N N N N -5.070 82.705 14.453 4.553 1.164 1.190 H10 GY7 44
GY7 H11 H11 H 0 1 N N N N N N -6.326 83.283 15.599 4.821 -0.520 1.735 H11 GY7 45
GY7 H12 H12 H 0 1 N N N N N N -10.436 78.901 11.657 5.770 -4.371 -0.037 H12 GY7 46
GY7 H13 H13 H 0 1 N N N N N N -12.481 79.772 12.705 6.939 -3.400 -1.969 H13 GY7 47
GY7 H14 H14 H 0 1 N N N N N N -12.411 81.782 14.123 6.157 -1.293 -2.964 H14 GY7 48
GY7 H15 H15 H 0 1 N N N N N N -6.801 79.635 13.719 1.077 -0.156 2.276 H15 GY7 49
GY7 H16 H16 H 0 1 N N N N N N -10.472 84.204 17.872 -4.451 0.038 -1.215 H16 GY7 50
GY7 H17 H17 H 0 1 N N N N N N -11.000 83.184 19.253 -5.025 0.977 0.184 H17 GY7 51
GY7 H18 H18 H 0 1 N N N N N N -9.545 85.147 19.849 -4.600 -0.967 1.663 H18 GY7 52
GY7 H19 H19 H 0 1 N N N N N N -8.959 83.546 20.417 -4.026 -1.906 0.265 H19 GY7 53
GY7 H20 H20 H 0 1 N N N N N N -8.762 82.417 17.426 -2.437 0.007 0.765 H20 GY7 54
GY7 H21 H21 H 0 1 N N N N N N -8.034 77.824 14.646 2.578 2.687 0.543 H21 GY7 55
GY7 H22 H22 H 0 1 N N N N N N -11.295 77.441 17.411 -0.646 4.609 -1.989 H22 GY7 56
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GY7 F2 C21 SING N N 1
GY7 C22 C21 DOUB Y N 2
GY7 C22 C23 SING Y N 3
GY7 C21 C2 SING Y N 4
GY7 C23 C24 DOUB Y N 5
GY7 O1 C3 DOUB N N 6
GY7 C2 C3 SING N N 7
GY7 C2 C1 DOUB Y N 8
GY7 C3 N1 SING N N 9
GY7 C24 C1 SING Y N 10
GY7 C1 F1 SING N N 11
GY7 N1 C4 SING N N 12
GY7 N1 C20 SING N N 13
GY7 C4 C18 SING N N 14
GY7 C4 C5 SING N N 15
GY7 C20 C19 SING N N 16
GY7 N4 C5 SING N N 17
GY7 N4 C17 SING N N 18
GY7 C18 C19 SING N N 19
GY7 C5 N2 DOUB N N 20
GY7 O4 C17 DOUB N N 21
GY7 C17 C16 SING N N 22
GY7 N2 C6 SING N N 23
GY7 C16 C6 DOUB N N 24
GY7 C16 O3 SING N N 25
GY7 C6 C7 SING N N 26
GY7 C14 C13 DOUB Y N 27
GY7 C14 C15 SING Y N 28
GY7 C13 C12 SING Y N 29
GY7 C15 C10 DOUB Y N 30
GY7 N3 C7 SING N N 31
GY7 N3 C8 SING N N 32
GY7 C7 O2 DOUB N N 33
GY7 C12 C11 DOUB Y N 34
GY7 C8 C9 SING N N 35
GY7 C10 C11 SING Y N 36
GY7 C10 C9 SING N N 37
GY7 C11 H1 SING N N 38
GY7 C12 H2 SING N N 39
GY7 C13 H3 SING N N 40
GY7 C14 H4 SING N N 41
GY7 C15 H5 SING N N 42
GY7 C18 H6 SING N N 43
GY7 C18 H7 SING N N 44
GY7 C19 H8 SING N N 45
GY7 C19 H9 SING N N 46
GY7 C20 H10 SING N N 47
GY7 C20 H11 SING N N 48
GY7 C22 H12 SING N N 49
GY7 C23 H13 SING N N 50
GY7 C24 H14 SING N N 51
GY7 C4 H15 SING N N 52
GY7 C8 H16 SING N N 53
GY7 C8 H17 SING N N 54
GY7 C9 H18 SING N N 55
GY7 C9 H19 SING N N 56
GY7 N3 H20 SING N N 57
GY7 N4 H21 SING N N 58
GY7 O3 H22 SING N N 59
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GY7 SMILES ACDLabs 12.01 c4(F)c(C(N3CCCC3C1=NC(=C(O)C(N1)=O)C(=O)NCCc2ccccc2)=O)c(ccc4)F
GY7 InChI InChI 1.03 InChI=1S/C24H22F2N4O4/c25-15-8-4-9-16(26)18(15)24(34)30-13-5-10-17(30)21-28-19(20(31)23(33)29-21)22(32)27-12-11-14-6-2-1-3-7-14/h1-4,6-9,17,31H,5,10-13H2,(H,27,32)(H,28,29,33)/t17-/m0/s1
GY7 InChIKey InChI 1.03 XCPZFRIVOHADCX-KRWDZBQOSA-N
GY7 SMILES_CANONICAL CACTVS 3.385 OC1=C(N=C(NC1=O)[C@@H]2CCCN2C(=O)c3c(F)cccc3F)C(=O)NCCc4ccccc4
GY7 SMILES CACTVS 3.385 OC1=C(N=C(NC1=O)[CH]2CCCN2C(=O)c3c(F)cccc3F)C(=O)NCCc4ccccc4
GY7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 c1ccc(cc1)CCNC(=O)C2=C(C(=O)NC(=N2)[C@@H]3CCCN3C(=O)c4c(cccc4F)F)O
GY7 SMILES "OpenEye OEToolkits" 2.0.6 c1ccc(cc1)CCNC(=O)C2=C(C(=O)NC(=N2)C3CCCN3C(=O)c4c(cccc4F)F)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GY7 "SYSTEMATIC NAME" ACDLabs 12.01 2-[(2S)-1-(2,6-difluorobenzene-1-carbonyl)pyrrolidin-2-yl]-5-hydroxy-6-oxo-N-(2-phenylethyl)-1,6-dihydropyrimidine-4-carboxamide
GY7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 2-[(2~{S})-1-[2,6-bis(fluoranyl)phenyl]carbonylpyrrolidin-2-yl]-5-oxidanyl-6-oxidanylidene-~{N}-(2-phenylethyl)-1~{H}-pyrimidine-4-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GY7 'Create component' 2017-07-11 RCSB
GY7 'Initial release' 2017-12-27 RCSB
GY7 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id GY7
_pdbx_chem_comp_synonyms.name SRI-29731
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id GY7
_pdbe_chem_comp_synonyms.name SRI-29731
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
GY7 C1 C 19.411 2.627 1
GY7 C10 C 5.598 -1.381 2
GY7 C11 C 4.299 -0.631 3
GY7 C12 C 3.000 -1.381 4
GY7 C13 C 3.000 -2.881 5
GY7 C14 C 4.299 -3.631 6
GY7 C15 C 5.598 -2.881 7
GY7 C16 C 12.093 0.869 8
GY7 C17 C 13.392 1.619 9
GY7 C18 C 16.147 -2.873 10
GY7 C19 C 17.614 -3.184 11
GY7 C2 C 19.099 1.160 12
GY7 C20 C 18.364 -1.885 13
GY7 C21 C 20.214 0.156 14
GY7 C22 C 21.640 0.620 15
GY7 C23 C 21.952 2.087 16
GY7 C24 C 20.838 3.091 17
GY7 C3 C 17.673 0.697 18
GY7 C4 C 15.990 -1.381 19
GY7 C5 C 14.691 -0.631 20
GY7 C6 C 12.093 -0.631 21
GY7 C7 C 10.794 -1.381 22
GY7 C8 C 8.196 -1.381 23
GY7 C9 C 6.897 -0.631 24
GY7 F1 F 18.296 3.631 25
GY7 F2 F 19.902 -1.311 26
GY7 N1 N 17.361 -0.771 27
GY7 N2 N 13.392 -1.381 28
GY7 N3 N 9.495 -0.631 29
GY7 N4 N 14.691 0.869 30
GY7 O1 O 16.558 1.700 31
GY7 O2 O 10.794 -2.881 32
GY7 O3 O 10.794 1.619 33
GY7 O4 O 13.392 3.119 34
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
GY7 F2 C21 SINGLE NONE 1
GY7 C22 C21 DOUBLE NONE 2
GY7 C22 C23 SINGLE NONE 3
GY7 C21 C2 SINGLE NONE 4
GY7 C23 C24 DOUBLE NONE 5
GY7 O1 C3 DOUBLE NONE 6
GY7 C2 C3 SINGLE NONE 7
GY7 C2 C1 DOUBLE NONE 8
GY7 C3 N1 SINGLE NONE 9
GY7 C24 C1 SINGLE NONE 10
GY7 C1 F1 SINGLE NONE 11
GY7 N1 C4 SINGLE NONE 12
GY7 N1 C20 SINGLE NONE 13
GY7 C4 C18 SINGLE NONE 14
GY7 C4 C5 SINGLE BEGINWEDGE 15
GY7 C20 C19 SINGLE NONE 16
GY7 N4 C5 SINGLE NONE 17
GY7 N4 C17 SINGLE NONE 18
GY7 C18 C19 SINGLE NONE 19
GY7 C5 N2 DOUBLE NONE 20
GY7 O4 C17 DOUBLE NONE 21
GY7 C17 C16 SINGLE NONE 22
GY7 N2 C6 SINGLE NONE 23
GY7 C16 C6 DOUBLE NONE 24
GY7 C16 O3 SINGLE NONE 25
GY7 C6 C7 SINGLE NONE 26
GY7 C14 C13 DOUBLE NONE 27
GY7 C14 C15 SINGLE NONE 28
GY7 C13 C12 SINGLE NONE 29
GY7 C15 C10 DOUBLE NONE 30
GY7 N3 C7 SINGLE NONE 31
GY7 N3 C8 SINGLE NONE 32
GY7 C7 O2 DOUBLE NONE 33
GY7 C12 C11 DOUBLE NONE 34
GY7 C8 C9 SINGLE NONE 35
GY7 C10 C11 SINGLE NONE 36
GY7 C10 C9 SINGLE NONE 37
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
GY7 MurckoScaffold S1 scaffold 'O=C(NCCc1ccccc1)c1cc(=O)[nH]c([C@@H]2CCCN2C(=O)c2ccccc2)n1' InChI=1S/C24H24N4O3/c29-21-16-19(23(30)25-14-13-17-8-3-1-4-9-17)26-22(27-21)20-12-7-15-28(20)24(31)18-10-5-2-6-11-18/h1-6,8-11,16,20H,7,12-15H2,(H,25,30)(H,26,27,29)/t20-/m0/s1 WGYQYNUSNLYZAS-FQEVSTJZSA-N
GY7 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
GY7 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
GY7 pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
GY7 Z54226006 F4 fragment O=C(c1c(F)cccc1F)N1CCCC1 InChI=1S/C11H11F2NO/c12-8-4-3-5-9(13)10(8)11(15)14-6-1-2-7-14/h3-5H,1-2,6-7H2 WKDBMZQECSVNDS-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
GY7 C1 S1 1
GY7 C10 S1 1
GY7 C11 S1 1
GY7 C12 S1 1
GY7 C13 S1 1
GY7 C14 S1 1
GY7 C15 S1 1
GY7 C16 S1 1
GY7 C17 S1 1
GY7 C18 S1 1
GY7 C19 S1 1
GY7 C2 S1 1
GY7 C20 S1 1
GY7 C21 S1 1
GY7 C22 S1 1
GY7 C23 S1 1
GY7 C24 S1 1
GY7 C3 S1 1
GY7 C4 S1 1
GY7 C5 S1 1
GY7 C6 S1 1
GY7 C7 S1 1
GY7 C8 S1 1
GY7 C9 S1 1
GY7 N1 S1 1
GY7 N2 S1 1
GY7 N3 S1 1
GY7 N4 S1 1
GY7 O1 S1 1
GY7 O2 S1 1
GY7 O4 S1 1
GY7 N1 F1 1
GY7 C3 F1 1
GY7 O1 F1 1
GY7 C2 F1 1
GY7 N3 F1 2
GY7 C7 F1 2
GY7 O2 F1 2
GY7 C6 F1 2
GY7 C1 F2 1
GY7 C2 F2 1
GY7 C21 F2 1
GY7 C22 F2 1
GY7 C23 F2 1
GY7 C24 F2 1
GY7 C10 F2 2
GY7 C15 F2 2
GY7 C14 F2 2
GY7 C13 F2 2
GY7 C12 F2 2
GY7 C11 F2 2
GY7 C16 F3 1
GY7 C17 F3 1
GY7 N4 F3 1
GY7 C5 F3 1
GY7 N2 F3 1
GY7 C6 F3 1
GY7 F1 F4 1
GY7 C1 F4 1
GY7 C24 F4 1
GY7 C23 F4 1
GY7 C22 F4 1
GY7 C21 F4 1
GY7 F2 F4 1
GY7 C2 F4 1
GY7 C3 F4 1
GY7 O1 F4 1
GY7 N1 F4 1
GY7 C4 F4 1
GY7 C18 F4 1
GY7 C19 F4 1
GY7 C20 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id GY7
_pdbe_chem_comp_rdkit_properties.exactmw 468.161
_pdbe_chem_comp_rdkit_properties.amw 468.460
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 34
_pdbe_chem_comp_rdkit_properties.NumAtoms 56
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.250
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 223.930
_pdbe_chem_comp_rdkit_properties.tpsa 115.390
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.922
_pdbe_chem_comp_rdkit_properties.CrippenMR 116.805
_pdbe_chem_comp_rdkit_properties.chi0v 16.178
_pdbe_chem_comp_rdkit_properties.chi1v 8.707
_pdbe_chem_comp_rdkit_properties.chi2v 3.860
_pdbe_chem_comp_rdkit_properties.chi3v 3.860
_pdbe_chem_comp_rdkit_properties.chi4v 2.406
_pdbe_chem_comp_rdkit_properties.chi0n 38.178
_pdbe_chem_comp_rdkit_properties.chi1n 19.510
_pdbe_chem_comp_rdkit_properties.chi2n 3.860
_pdbe_chem_comp_rdkit_properties.chi3n 3.860
_pdbe_chem_comp_rdkit_properties.chi4n 2.406
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.080
_pdbe_chem_comp_rdkit_properties.kappa1 8.297
_pdbe_chem_comp_rdkit_properties.kappa2 9.817
_pdbe_chem_comp_rdkit_properties.kappa3 4.656
_pdbe_chem_comp_rdkit_properties.Phi 2.396
#
_pdbe_chem_comp_external_mappings.comp_id GY7
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 135567360
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
GY7 C1 -5.874 0.655 1.949 ETKDGv3 1
GY7 C10 6.321 -0.500 0.787 ETKDGv3 2
GY7 C11 7.288 0.330 0.025 ETKDGv3 3
GY7 C12 8.540 0.487 0.471 ETKDGv3 4
GY7 C13 8.964 -0.162 1.729 ETKDGv3 5
GY7 C14 8.094 -0.902 2.427 ETKDGv3 6
GY7 C15 6.709 -1.073 1.940 ETKDGv3 7
GY7 C16 0.408 0.822 -2.620 ETKDGv3 8
GY7 C17 -0.994 0.535 -2.977 ETKDGv3 9
GY7 C18 -2.334 -2.686 -0.133 ETKDGv3 10
GY7 C19 -3.753 -2.754 -0.692 ETKDGv3 11
GY7 C2 -5.065 1.199 1.020 ETKDGv3 12
GY7 C20 -4.483 -1.542 -0.126 ETKDGv3 13
GY7 C21 -5.546 2.349 0.213 ETKDGv3 14
GY7 C22 -6.785 2.824 0.393 ETKDGv3 15
GY7 C23 -7.675 2.211 1.399 ETKDGv3 16
GY7 C24 -7.242 1.183 2.139 ETKDGv3 17
GY7 C3 -3.694 0.697 0.821 ETKDGv3 18
GY7 C4 -2.113 -1.226 0.268 ETKDGv3 19
GY7 C5 -1.277 -0.499 -0.757 ETKDGv3 20
GY7 C6 0.860 0.437 -1.405 ETKDGv3 21
GY7 C7 2.260 0.675 -0.963 ETKDGv3 22
GY7 C8 4.034 0.498 0.847 ETKDGv3 23
GY7 C9 4.904 -0.636 0.298 ETKDGv3 24
GY7 F1 -5.440 -0.352 2.749 ETKDGv3 25
GY7 F2 -4.738 2.915 -0.719 ETKDGv3 26
GY7 N1 -3.445 -0.645 0.360 ETKDGv3 27
GY7 N2 -0.030 -0.235 -0.492 ETKDGv3 28
GY7 N3 2.656 0.355 0.381 ETKDGv3 29
GY7 N4 -1.826 -0.134 -2.031 ETKDGv3 30
GY7 O1 -2.727 1.478 1.032 ETKDGv3 31
GY7 O2 3.111 1.156 -1.761 ETKDGv3 32
GY7 O3 1.238 1.482 -3.528 ETKDGv3 33
GY7 O4 -1.458 0.873 -4.098 ETKDGv3 34
GY7 H1 6.982 0.813 -0.895 ETKDGv3 35
GY7 H2 9.244 1.091 -0.086 ETKDGv3 36
GY7 H3 9.978 -0.034 2.086 ETKDGv3 37
GY7 H4 8.402 -1.374 3.351 ETKDGv3 38
GY7 H5 6.015 -1.663 2.526 ETKDGv3 39
GY7 H6 -1.590 -3.052 -0.875 ETKDGv3 40
GY7 H7 -2.271 -3.328 0.773 ETKDGv3 41
GY7 H8 -3.718 -2.686 -1.802 ETKDGv3 42
GY7 H9 -4.256 -3.702 -0.403 ETKDGv3 43
GY7 H10 -5.088 -1.045 -0.916 ETKDGv3 44
GY7 H11 -5.140 -1.854 0.713 ETKDGv3 45
GY7 H12 -7.140 3.658 -0.199 ETKDGv3 46
GY7 H13 -8.676 2.598 1.540 ETKDGv3 47
GY7 H14 -7.892 0.739 2.881 ETKDGv3 48
GY7 H15 -1.620 -1.182 1.265 ETKDGv3 49
GY7 H16 4.437 1.486 0.536 ETKDGv3 50
GY7 H17 4.046 0.459 1.959 ETKDGv3 51
GY7 H18 4.896 -0.615 -0.813 ETKDGv3 52
GY7 H19 4.480 -1.615 0.612 ETKDGv3 53
GY7 H20 1.935 0.064 1.079 ETKDGv3 54
GY7 H21 -2.820 -0.345 -2.269 ETKDGv3 55
GY7 H22 0.908 1.775 -4.440 ETKDGv3 56
#