Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GG2

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 59


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 7.169 10.434 -2.106
2 C2 C C2 N Y N 0 6.104 10.49 -3.005
3 C3 C C3 N Y N 0 4.826 10.818 -2.553
4 O4 O O4 N N N 0 8.416 10.114 -2.548
5 N6 N N6 N N N 0 2.96 12.704 -0.745
6 C7 C C7 N Y N 0 1.113 7.109 0.478
7 C8 C C8 N N N 0 2.449 9.115 -0.177
8 C10 C C10 N N N 0 1.713 12.652 -0.266
9 C11 C C11 N N N 0 0.963 13.864 -0.101
10 C12 C C12 N N N 0 1.309 11.339 0.024
11 C13 C C13 N N N 0 2.385 10.552 -0.307
12 C14 C C14 N Y N 0 -0.167 5.067 0.502
13 C15 C C15 N N N 0 9.459 10.075 -1.575
14 C16 C C16 N Y N 0 0.932 4.388 1.029
15 C19 C C19 N N N 0 1.97 2.144 1.241
16 C20 C C20 N N N 0 -0.512 2.403 1.477
17 C21 C C21 N N N 0 -0.556 1.117 2.284
18 C4 C C4 N Y N 0 4.624 11.086 -1.205
19 C22 C C22 N Y N 0 2.211 6.437 1.004
20 C24 C C24 N N N 0 -0.059 9.302 0.098
21 C5 C C5 N Y N 0 5.678 11.033 -0.302
22 C6 C C6 N Y N 0 6.956 10.706 -0.755
23 N1 N N1 N N N 0 3.346 11.414 -0.753
24 N5 N N5 N N N 0 1.207 8.52 0.193
25 C44 C C44 N Y N 0 -0.076 6.431 0.226
26 N2 N N2 N N N 0 0.836 2.973 1.318
27 C18 C C18 N Y N 0 2.121 5.072 1.281
28 O3 O O3 N N N 0 3.492 8.503 -0.396
29 C25 C C25 N N N 0 0.46 0.145 1.725
30 O2 O O2 N N N 0 3.066 2.472 0.779
31 C23 C C23 N N N 0 1.838 0.758 1.849
32 O1 O O1 N N N 0 -0.201 13.871 0.365
33 N3 N N3 N N N 0 1.567 15.077 -0.457
34 C17 C C17 N N N 0 0.072 10.76 0.573
35 H2 H H2 N N N 0 6.264 10.279 -4.059
36 H3 H H3 N N N 0 4.005 10.857 -3.264
37 H14 H H14 N N N 0 -1.098 4.543 0.303
38 H151 H 1H15 N N N 0 9.884 11.074 -1.455
39 H152 H 2H15 N N N 0 10.233 9.374 -1.898
40 H153 H 3H15 N N N 0 9.043 9.742 -0.621
41 H201 H 1H20 N N N 0 -0.897 2.222 0.466
42 H202 H 2H20 N N N 0 -1.156 3.154 1.951
43 H211 H 1H21 N N N 0 -1.561 0.684 2.242
44 H212 H 2H21 N N N 0 -0.334 1.328 3.338
45 H22 H H22 N N N 0 3.143 6.96 1.204
46 H6 H H6 N N N 0 7.782 10.664 -0.05
47 H241 H 1H24 N N N 0 -0.84 8.793 0.674
48 H242 H 2H24 N N N 0 -0.349 9.283 -0.961
49 H5 H H5 N N N 0 5.526 11.243 0.754
50 H44 H H44 N N N 0 -0.937 6.95 -0.186
51 H18 H H18 N N N 0 2.982 4.553 1.692
52 H251 H 1H25 N N N 0 0.235 -0.075 0.675
53 H252 H 2H25 N N N 0 0.421 -0.801 2.275
54 H231 H 1H23 N N N 0 2.567 0.099 1.362
55 H232 H 2H23 N N N 0 2.124 0.84 2.905
56 HN31 H 1HN3 N N N 0 2.514 15.064 -0.821
57 HN32 H 2HN3 N N N 0 1.089 15.967 -0.364
58 H171 H 1H17 N N N 0 0.124 10.782 1.669
59 H172 H 2H17 N N N 0 -0.81 11.333 0.269