Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : G

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 38


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 OP3 O O3P N N Y 0 -1.945 -1.36 5.599
2 P P P N N N 0 -0.911 -0.277 5.008
3 OP1 O O1P N N N 0 -1.598 1.022 4.844
4 OP2 O O2P N N N 0 0.325 -0.105 6.025
5 O5' O O5* N N N 0 -0.365 -0.78 3.58
6 C5' C C5* N N N 0 0.542 0.217 3.109
7 C4' C C4* R N N 0 1.1 -0.2 1.748
8 O4' O O4* N N N 0 0.033 -0.318 0.782
9 C3' C C3* S N N 0 2.025 0.898 1.182
10 O3' O O3* N N N 0 3.395 0.582 1.439
11 C2' C C2* R N N 0 1.741 0.884 -0.338
12 O2' O O2* N N N 0 2.927 0.56 -1.066
13 C1' C C1* R N N 0 0.675 -0.22 -0.507
14 N9 N N9 N Y N 0 -0.297 0.162 -1.534
15 C8 C C8 N Y N 0 -1.44 0.88 -1.334
16 N7 N N7 N Y N 0 -2.066 1.037 -2.464
17 C5 C C5 N Y N 0 -1.364 0.431 -3.453
18 C6 C C6 N N N 0 -1.556 0.279 -4.846
19 O6 O O6 N N N 0 -2.534 0.755 -5.397
20 N1 N N1 N N N 0 -0.626 -0.401 -5.551
21 C2 C C2 N N N 0 0.459 -0.934 -4.923
22 N2 N N2 N N N 0 1.384 -1.626 -5.664
23 N3 N N3 N N N 0 0.649 -0.8 -3.63
24 C4 C C4 N Y N 0 -0.226 -0.134 -2.868
25 HOP3 H 3HOP N N N 0 -2.247 -1.021 6.453
26 HOP2 H 2HOP N N N 0 0.745 -0.973 6.104
27 H5' H 1H5* N N N 0 1.362 0.327 3.82
28 H5'' H 2H5* N N N 0 0.018 1.168 3.011
29 H4' H H4* N N N 0 1.64 -1.144 1.833
30 H3' H H3* N N N 0 1.772 1.868 1.61
31 HO3' H H3T N N Y 0 3.923 1.3 1.065
32 H2' H H2* N N N 0 1.346 1.847 -0.662
33 HO2' H 2HO* N N N 0 3.573 1.254 -0.871
34 H1' H H1* N N N 0 1.148 -1.167 -0.769
35 H8 H H8 N N N 0 -1.776 1.261 -0.381
36 H1 H H1 N N N 0 -0.736 -0.518 -6.508
37 H21 H 1H2 N N N 0 2.165 -2.007 -5.232
38 H22 H 2H2 N N N 0 1.256 -1.736 -6.619