data_G
#
_chem_comp.id G
_chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE"
_chem_comp.type 'RNA LINKING'
_chem_comp.pdbx_type ATOMN
_chem_comp.formula 'C10 H14 N5 O8 P'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 363.221
_chem_comp.one_letter_code G
_chem_comp.three_letter_code G
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
G OP3 O3P O 0 1 N Y N N N N 34.313 3.314 -0.422 -1.945 -1.360 5.599 OP3 G 1
G P P P 0 1 N N N N N N 33.741 4.431 0.367 -0.911 -0.277 5.008 P G 2
G OP1 O1P O 0 1 N N N N N N 33.537 5.671 -0.451 -1.598 1.022 4.844 OP1 G 3
G OP2 O2P O 0 1 N N N N N N 34.442 4.727 1.661 0.325 -0.105 6.025 OP2 G 4
G "O5'" O5* O 0 1 N N N N N N 32.289 3.932 0.811 -0.365 -0.780 3.580 "O5'" G 5
G "C5'" C5* C 0 1 N N N N N N 32.101 2.551 1.198 0.542 0.217 3.109 "C5'" G 6
G "C4'" C4* C 0 1 N N R N N N 30.760 2.450 1.879 1.100 -0.200 1.748 "C4'" G 7
G "O4'" O4* O 0 1 N N N N N N 30.797 3.202 3.104 0.033 -0.318 0.782 "O4'" G 8
G "C3'" C3* C 0 1 N N S N N N 29.597 3.022 1.070 2.025 0.898 1.182 "C3'" G 9
G "O3'" O3* O 0 1 N N N N N N 29.106 2.045 0.152 3.395 0.582 1.439 "O3'" G 10
G "C2'" C2* C 0 1 N N R N N N 28.603 3.421 2.118 1.741 0.884 -0.338 "C2'" G 11
G "O2'" O2* O 0 1 N N N N N N 27.930 2.319 2.657 2.927 0.560 -1.066 "O2'" G 12
G "C1'" C1* C 0 1 N N R N N N 29.487 3.936 3.170 0.675 -0.220 -0.507 "C1'" G 13
G N9 N9 N 0 1 Y N N N N N 29.942 5.378 3.195 -0.297 0.162 -1.534 N9 G 14
G C8 C8 C 0 1 Y N N N N N 31.187 5.907 3.065 -1.440 0.880 -1.334 C8 G 15
G N7 N7 N 0 1 Y N N N N N 31.237 7.191 3.136 -2.066 1.037 -2.464 N7 G 16
G C5 C5 C 0 1 Y N N N N N 29.896 7.536 3.341 -1.364 0.431 -3.453 C5 G 17
G C6 C6 C 0 1 N N N N N N 29.331 8.813 3.503 -1.556 0.279 -4.846 C6 G 18
G O6 O6 O 0 1 N N N N N N 29.901 9.926 3.495 -2.534 0.755 -5.397 O6 G 19
G N1 N1 N 0 1 N N N N N N 27.948 8.749 3.683 -0.626 -0.401 -5.551 N1 G 20
G C2 C2 C 0 1 N N N N N N 27.233 7.615 3.707 0.459 -0.934 -4.923 C2 G 21
G N2 N2 N 0 1 N N N N N N 25.894 7.743 3.899 1.384 -1.626 -5.664 N2 G 22
G N3 N3 N 0 1 N N N N N N 27.758 6.393 3.559 0.649 -0.800 -3.630 N3 G 23
G C4 C4 C 0 1 Y N N N N N 29.079 6.431 3.382 -0.226 -0.134 -2.868 C4 G 24
G HOP3 3HOP H 0 0 N N N N N N 34.442 2.528 0.096 -2.247 -1.021 6.453 HOP3 G 25
G HOP2 2HOP H 0 0 N N N N N N 34.571 3.941 2.179 0.745 -0.973 6.104 HOP2 G 26
G "H5'" 1H5* H 0 1 N N N N N N 32.209 1.841 0.344 1.362 0.327 3.820 "H5'" G 27
G "H5''" 2H5* H 0 0 N N N N N N 32.936 2.156 1.822 0.018 1.168 3.011 "H5''" G 28
G "H4'" H4* H 0 1 N N N N N N 30.585 1.358 2.025 1.640 -1.144 1.833 "H4'" G 29
G "H3'" H3* H 0 1 N N N N N N 29.867 3.891 0.426 1.772 1.868 1.610 "H3'" G 30
G "HO3'" H3T H 0 0 N Y N N N N 28.382 2.400 -0.351 3.923 1.300 1.065 "HO3'" G 31
G "H2'" H2* H 0 1 N N N N N N 27.827 4.115 1.719 1.346 1.847 -0.662 "H2'" G 32
G "HO2'" 2HO* H 0 0 N N N N N N 27.299 2.572 3.321 3.573 1.254 -0.871 "HO2'" G 33
G "H1'" H1* H 0 1 N N N N N N 28.814 3.801 4.048 1.148 -1.167 -0.769 "H1'" G 34
G H8 H8 H 0 1 N N N N N N 32.110 5.323 2.909 -1.776 1.261 -0.381 H8 G 35
G H1 H1 H 0 1 N N N N N N 27.411 9.607 3.808 -0.736 -0.518 -6.508 H1 G 36
G H21 1H2 H 0 1 N N N N N N 25.350 6.880 3.917 2.165 -2.007 -5.232 H21 G 37
G H22 2H2 H 0 1 N N N N N N 25.507 8.377 3.200 1.256 -1.736 -6.619 H22 G 38
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
G OP3 P SING N N 1
G OP3 HOP3 SING N N 2
G P OP1 DOUB N N 3
G P OP2 SING N N 4
G P "O5'" SING N N 5
G OP2 HOP2 SING N N 6
G "O5'" "C5'" SING N N 7
G "C5'" "C4'" SING N N 8
G "C5'" "H5'" SING N N 9
G "C5'" "H5''" SING N N 10
G "C4'" "O4'" SING N N 11
G "C4'" "C3'" SING N N 12
G "C4'" "H4'" SING N N 13
G "O4'" "C1'" SING N N 14
G "C3'" "O3'" SING N N 15
G "C3'" "C2'" SING N N 16
G "C3'" "H3'" SING N N 17
G "O3'" "HO3'" SING N N 18
G "C2'" "O2'" SING N N 19
G "C2'" "C1'" SING N N 20
G "C2'" "H2'" SING N N 21
G "O2'" "HO2'" SING N N 22
G "C1'" N9 SING N N 23
G "C1'" "H1'" SING N N 24
G N9 C8 SING Y N 25
G N9 C4 SING Y N 26
G C8 N7 DOUB Y N 27
G C8 H8 SING N N 28
G N7 C5 SING Y N 29
G C5 C6 SING N N 30
G C5 C4 DOUB Y N 31
G C6 O6 DOUB N N 32
G C6 N1 SING N N 33
G N1 C2 SING N N 34
G N1 H1 SING N N 35
G C2 N2 SING N N 36
G C2 N3 DOUB N N 37
G N2 H21 SING N N 38
G N2 H22 SING N N 39
G N3 C4 SING N N 40
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
G SMILES ACDLabs 10.04 'O=C1c2ncn(c2N=C(N)N1)C3OC(C(O)C3O)COP(=O)(O)O'
G SMILES_CANONICAL CACTVS 3.341 'NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O'
G SMILES CACTVS 3.341 'NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O'
G SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 'c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)N=C(NC2=O)N'
G SMILES 'OpenEye OEToolkits' 1.5.0 'c1nc2c(n1C3C(C(C(O3)COP(=O)(O)O)O)O)N=C(NC2=O)N'
G InChI InChI 1.03 'InChI=1S/C10H14N5O8P/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(23-9)1-22-24(19,20)21/h2-3,5-6,9,16-17H,1H2,(H2,19,20,21)(H3,11,13,14,18)/t3-,5-,6-,9-/m1/s1'
G InChIKey InChI 1.03 RQFCJASXJCIDSX-UUOKFMHZSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
G 'SYSTEMATIC NAME' ACDLabs 10.04
;5'-guanylic acid
;
G 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.5.0 '[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
G 'Create component' 1999-07-08 RCSB
G 'Modify descriptor' 2011-06-04 RCSB
G 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id G
_pdbx_chem_comp_pcm.modified_residue_id LYS
_pdbx_chem_comp_pcm.type GMPylation
_pdbx_chem_comp_pcm.category 'Nucleotide monophosphate'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom P
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
_pdbe_chem_comp_drugbank_details.comp_id G
_pdbe_chem_comp_drugbank_details.drugbank_id DB01972
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name "Guanosine-5'-Monophosphate"
_pdbe_chem_comp_drugbank_details.description
'Guanosine 5'-monophosphate. A guanine nucleotide containing one phosphate group esterified to the sugar moiety and found widely in nature. [PubChem]'
_pdbe_chem_comp_drugbank_details.cas_number 85-32-5
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id G
_pdbe_chem_comp_drugbank_classification.drugbank_id DB01972
_pdbe_chem_comp_drugbank_classification.parent 'Purine ribonucleoside monophosphates'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Purine nucleotides'
_pdbe_chem_comp_drugbank_classification.superclass 'Nucleosides, nucleotides, and analogues'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as purine ribonucleoside monophosphates. These are nucleotides consisting of a purine base linked to a ribose to which one monophosphate group is attached.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
G DB01972 'Disks large homolog 4' Humans P78352 yes 1
G DB01972 'Hypoxanthine-guanine-xanthine phosphoribosyltransferase' 'Plasmodium falciparum (isolate FCR-3 / Gambia)' P20035 unknown 2
G DB01972 'DNA polymerase catalytic subunit' HHV-5 P08546 unknown 3
G DB01972 "cGMP-specific 3',5'-cyclic phosphodiesterase" Humans O76074 unknown 4
G DB01972 'DNA polymerase catalytic subunit' HHV-1 P04293 unknown 5
G DB01972 'Guanylate kinase' Humans Q16774 unknown 6
G DB01972 'Response regulator PleD' 'Caulobacter crescentus (strain ATCC 19089 / CB15)' Q9A5I5 unknown 7
G DB01972 'DNA-directed DNA polymerase' 'Enterobacteria phage RB69' Q38087 unknown 8
G DB01972 'GMP reductase 1' Humans P36959 unknown 9
G DB01972 "Adenosine 5'-monophosphoramidase HINT1" Humans P49773 unknown 10
G DB01972 'Bifunctional purine biosynthesis protein ATIC' Humans P31939 unknown 11
G DB01972 Amidophosphoribosyltransferase 'Bacillus subtilis (strain 168)' P00497 unknown 12
G DB01972 'Protein-glutamine gamma-glutamyltransferase E' Humans Q08188 unknown 13
G DB01972 'Bifunctional protein PyrR' 'Bacillus caldolyticus' P41007 unknown 14
G DB01972 'Xanthine-guanine phosphoribosyltransferase' 'Escherichia coli (strain K12)' P0A9M5 unknown 15
G DB01972 Amidophosphoribosyltransferase 'Escherichia coli (strain K12)' P0AG16 unknown 16
G DB01972 'Bifunctional adenosylcobalamin biosynthesis protein CobU' 'Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)' Q05599 unknown 17
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
G OP3 O 16.032 4.532 1
G P P 14.817 3.652 2
G OP1 O 15.697 2.437 3
G OP2 O 13.938 4.867 4
G "O5'" O 13.602 2.772 5
G "C5'" C 12.233 3.385 6
G "C4'" C 11.018 2.505 7
G "O4'" O 11.015 1.005 8
G "C3'" C 9.592 2.971 9
G "O3'" O 9.131 4.399 10
G "C2'" C 8.708 1.759 11
G "O2'" O 7.208 1.762 12
G "C1'" C 9.588 0.544 13
G N9 N 9.122 -0.882 14
G C8 C 9.997 -2.089 15
G N7 N 9.122 -3.296 16
G C5 C 7.702 -2.839 17
G C6 C 6.404 -3.589 18
G O6 O 6.404 -5.089 19
G N1 N 5.104 -2.839 20
G C2 C 5.104 -1.339 21
G N2 N 3.805 -0.589 22
G N3 N 6.404 -0.589 23
G C4 C 7.702 -1.339 24
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
G OP3 P SINGLE NONE 1
G P OP1 DOUBLE NONE 2
G P OP2 SINGLE NONE 3
G P "O5'" SINGLE NONE 4
G "O5'" "C5'" SINGLE NONE 5
G "C4'" "C5'" SINGLE BEGINWEDGE 6
G "C4'" "O4'" SINGLE NONE 7
G "C4'" "C3'" SINGLE NONE 8
G "O4'" "C1'" SINGLE NONE 9
G "C3'" "O3'" SINGLE BEGINDASH 10
G "C3'" "C2'" SINGLE NONE 11
G "C2'" "O2'" SINGLE BEGINDASH 12
G "C2'" "C1'" SINGLE NONE 13
G "C1'" N9 SINGLE BEGINWEDGE 14
G N9 C8 SINGLE NONE 15
G N9 C4 SINGLE NONE 16
G C8 N7 DOUBLE NONE 17
G N7 C5 SINGLE NONE 18
G C5 C6 SINGLE NONE 19
G C5 C4 DOUBLE NONE 20
G C6 O6 DOUBLE NONE 21
G C6 N1 SINGLE NONE 22
G N1 C2 SINGLE NONE 23
G C2 N2 SINGLE NONE 24
G C2 N3 DOUBLE NONE 25
G N3 C4 SINGLE NONE 26
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
G MurckoScaffold S1 scaffold 'O=c1[nH]cnc2c1ncn2[C@H]1CCCO1' InChI=1S/C9H10N4O2/c14-9-7-8(10-4-11-9)13(5-12-7)6-2-1-3-15-6/h4-6H,1-3H2,(H,10,11,14)/t6-/m1/s1 JBXHFRZBULGPSC-ZCFIWIBFSA-N
G imidazole F1 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
G phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
G purine F3 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
G pyrimidine F4 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
G ribose F5 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
G "C4'" S1 1
G "O4'" S1 1
G "C3'" S1 1
G "C2'" S1 1
G "C1'" S1 1
G N9 S1 1
G C8 S1 1
G N7 S1 1
G C5 S1 1
G C6 S1 1
G O6 S1 1
G N1 S1 1
G C2 S1 1
G N3 S1 1
G C4 S1 1
G C5 F1 1
G C4 F1 1
G N9 F1 1
G C8 F1 1
G N7 F1 1
G OP3 F2 1
G P F2 1
G OP1 F2 1
G OP2 F2 1
G "O5'" F2 1
G N7 F3 1
G C8 F3 1
G N9 F3 1
G C4 F3 1
G C5 F3 1
G C6 F3 1
G N1 F3 1
G C2 F3 1
G N3 F3 1
G C5 F4 1
G C6 F4 1
G N1 F4 1
G C2 F4 1
G N3 F4 1
G C4 F4 1
G "C2'" F5 1
G "C3'" F5 1
G "C4'" F5 1
G "O4'" F5 1
G "C1'" F5 1
G "C5'" F5 1
G "O5'" F5 1
G "O3'" F5 1
G "O2'" F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id G
_pdbe_chem_comp_rdkit_properties.exactmw 363.058
_pdbe_chem_comp_rdkit_properties.amw 363.223
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 13
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 12
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 24
_pdbe_chem_comp_rdkit_properties.NumAtoms 38
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 14
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 152.656
_pdbe_chem_comp_rdkit_properties.tpsa 206.040
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.479
_pdbe_chem_comp_rdkit_properties.CrippenMR 73.559
_pdbe_chem_comp_rdkit_properties.chi0v 11.844
_pdbe_chem_comp_rdkit_properties.chi1v 7.152
_pdbe_chem_comp_rdkit_properties.chi2v 2.869
_pdbe_chem_comp_rdkit_properties.chi3v 2.869
_pdbe_chem_comp_rdkit_properties.chi4v 1.851
_pdbe_chem_comp_rdkit_properties.chi0n 24.949
_pdbe_chem_comp_rdkit_properties.chi1n 12.166
_pdbe_chem_comp_rdkit_properties.chi2n 2.554
_pdbe_chem_comp_rdkit_properties.chi3n 2.554
_pdbe_chem_comp_rdkit_properties.chi4n 1.656
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.860
_pdbe_chem_comp_rdkit_properties.kappa1 6.802
_pdbe_chem_comp_rdkit_properties.kappa2 5.895
_pdbe_chem_comp_rdkit_properties.kappa3 3.055
_pdbe_chem_comp_rdkit_properties.Phi 1.671
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
G UniChem DrugBank DB01972
G UniChem 'Guide to Pharmacology' 5123
G UniChem 'KEGG LIGAND' C00144
G UniChem ChEBI 17345
G UniChem ZINC ZINC000002159505
G UniChem eMolecules 29480205
G UniChem atlas CpG
G UniChem fdasrs 16597955EP
G UniChem SureChEMBL SCHEMBL19222125
G UniChem HMDB HMDB0001397
G UniChem 'PubChem TPHARMA' 16002058
G UniChem PubChem 135398631
G UniChem NMRShiftDB 60020700
G UniChem ACTor 25191-14-4
G UniChem ACTor 29593-02-0
G UniChem ACTor 573-48-8
G UniChem Nikkaji J10.615A
G UniChem BindingDb 50010318
G UniChem MetaboLights MTBLC17345
G UniChem BRENDA 100656
G UniChem BRENDA 1022
G UniChem BRENDA 14093
G UniChem BRENDA 162
G UniChem BRENDA 27054
G UniChem BRENDA 37344
G UniChem BRENDA 5973
G UniChem BRENDA 96075
G UniChem ChemicalBook CB6271952
G UniChem MedChemExpress HY-N5134
G UniChem 'Probes And Drugs' PD051028
G UniChem CCDC CIQYEH
G UniChem 'EPA CompTox Dashboard' DTXSID9044295
G UniChem eMolecules 5747772
G UniChem SureChEMBL SCHEMBL5854
G UniChem 'PubChem TPHARMA' 14901517
G UniChem 'PubChem TPHARMA' 16014337
G UniChem BindingDb 426061
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
G OP3 6.200 0.465 -1.960 ETKDGv3 1
G P 5.039 -0.629 -1.397 ETKDGv3 2
G OP1 4.385 -1.301 -2.582 ETKDGv3 3
G OP2 5.800 -1.798 -0.436 ETKDGv3 4
G "O5'" 3.870 0.220 -0.490 ETKDGv3 5
G "C5'" 2.968 -0.712 0.057 ETKDGv3 6
G "C4'" 1.883 0.039 0.835 ETKDGv3 7
G "O4'" 1.178 0.898 -0.033 ETKDGv3 8
G "C3'" 0.883 -0.911 1.484 ETKDGv3 9
G "O3'" 1.297 -1.302 2.768 ETKDGv3 10
G "C2'" -0.371 -0.075 1.531 ETKDGv3 11
G "O2'" -0.445 0.664 2.726 ETKDGv3 12
G "C1'" -0.181 0.882 0.351 ETKDGv3 13
G N9 -1.003 0.473 -0.787 ETKDGv3 14
G C8 -0.778 -0.651 -1.651 ETKDGv3 15
G N7 -1.853 -1.079 -2.246 ETKDGv3 16
G C5 -2.881 -0.221 -1.764 ETKDGv3 17
G C6 -4.321 -0.325 -1.964 ETKDGv3 18
G O6 -4.822 -1.169 -2.752 ETKDGv3 19
G N1 -5.148 0.576 -1.212 ETKDGv3 20
G C2 -4.532 1.502 -0.285 ETKDGv3 21
G N2 -5.345 2.383 0.488 ETKDGv3 22
G N3 -3.232 1.529 -0.143 ETKDGv3 23
G C4 -2.401 0.652 -0.919 ETKDGv3 24
G HOP3 6.542 0.912 -1.144 ETKDGv3 25
G HOP2 6.181 -1.290 0.324 ETKDGv3 26
G "H5'" 2.481 -1.310 -0.747 ETKDGv3 27
G "H5''" 3.495 -1.395 0.761 ETKDGv3 28
G "H4'" 2.371 0.660 1.620 ETKDGv3 29
G "H3'" 0.695 -1.804 0.841 ETKDGv3 30
G "HO3'" 1.977 -2.013 2.641 ETKDGv3 31
G "H2'" -1.282 -0.710 1.408 ETKDGv3 32
G "HO2'" -0.882 0.079 3.398 ETKDGv3 33
G "H1'" -0.475 1.915 0.642 ETKDGv3 34
G H8 0.187 -1.122 -1.782 ETKDGv3 35
G H1 -6.186 0.551 -1.322 ETKDGv3 36
G H21 -4.911 3.051 1.163 ETKDGv3 37
G H22 -6.384 2.369 0.388 ETKDGv3 38
#