Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : FMN

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 52


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 2.118 -2.493 0.531
2 C2 C C2 N N N 0 2.713 -3.638 0.206
3 O2 O O2 N N N 0 2.122 -4.677 0.445
4 N3 N N3 N N N 0 3.921 -3.721 -0.368
5 C4 C C4 N N N 0 4.636 -2.61 -0.664
6 O4 O O4 N N N 0 5.732 -2.682 -1.185
7 C4A C C4A N N N 0 4.027 -1.305 -0.325
8 N5 N N5 N N N 0 4.631 -0.17 -0.566
9 C5A C C5A N Y N 0 4.051 0.995 -0.246
10 C6 C C6 N Y N 0 4.718 2.206 -0.514
11 C7 C C7 N Y N 0 4.131 3.392 -0.19
12 C7M C C7M N N N 0 4.85 4.683 -0.48
13 C8 C C8 N Y N 0 2.874 3.423 0.405
14 C8M C C8M N N N 0 2.246 4.748 0.752
15 C9 C C9 N Y N 0 2.197 2.255 0.678
16 C9A C C9A N Y N 0 2.774 1.029 0.359
17 N10 N N10 N N N 0 2.101 -0.144 0.631
18 C10 C C10 N N N 0 2.695 -1.325 0.304
19 C1' C C1' N N N 0 0.777 -0.119 1.258
20 C2' C C2' S N N 0 -0.3 -0.06 0.173
21 O2' O O2' N N N 0 -0.122 1.121 -0.611
22 C3' C C3' S N N 0 -1.683 -0.035 0.827
23 O3' O O3' N N N 0 -1.86 -1.217 1.611
24 C4' C C4' R N N 0 -2.76 0.024 -0.258
25 O4' O O4' N N N 0 -2.582 1.206 -1.042
26 C5' C C5' N N N 0 -4.142 0.049 0.397
27 O5' O O5' N N N 0 -5.149 -0.013 -0.615
28 P P P N N N 0 -6.725 -0.007 -0.285
29 O1P O O1P N N N 0 -7.053 1.18 0.536
30 O2P O O2P N N N 0 -7.561 0.045 -1.66
31 O3P O O3P N N N 0 -7.109 -1.344 0.526
32 HN3 H HN3 N N N 0 4.291 -4.593 -0.577
33 H6 H H6 N N N 0 5.695 2.195 -0.975
34 HM71 H HM71 N N N 0 4.585 5.031 -1.479
35 HM72 H HM72 N N N 0 4.56 5.434 0.255
36 HM73 H HM73 N N N 0 5.927 4.52 -0.427
37 HM81 H HM81 N N N 0 1.656 5.103 -0.093
38 HM82 H HM82 N N N 0 1.599 4.627 1.622
39 HM83 H HM83 N N N 0 3.028 5.473 0.979
40 H9 H H9 N N N 0 1.222 2.29 1.141
41 H1'1 H H1'1 N N N 0 0.642 -1.021 1.856
42 H1'2 H H1'2 N N N 0 0.695 0.758 1.899
43 H2' H H2' N N N 0 -0.218 -0.938 -0.469
44 HO2' H HO2' N N N 0 -0.183 1.942 -0.104
45 H3' H H3' N N N 0 -1.765 0.842 1.469
46 HO3' H HO3' N N N 0 -1.8 -2.038 1.104
47 H4' H H4' N N N 0 -2.677 -0.853 -0.9
48 HO4' H HO4' N N N 0 -2.642 2.027 -0.535
49 H5'1 H H5'1 N N N 0 -4.244 -0.807 1.064
50 H5'2 H H5'2 N N N 0 -4.257 0.971 0.967
51 HOP2 H HOP2 N N N 0 -8.52 0.051 -1.537
52 HOP3 H HOP3 N N N 0 -6.921 -2.162 0.047