Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : FDF

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 52


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 PA P PA S N N 0 -4.82 0.527 0.201
2 PB P PB N N N 0 -6.826 -1.599 -0.293
3 C1 C C1 N N N 0 -2.413 1.679 0.081
4 O1 O O1 N N N 0 -3.213 0.496 0.116
5 O1A O O1A N N N 0 -5.271 1.17 1.607
6 O1B O O1B N N N 0 -7.845 -1.398 0.937
7 C2 C C2 N N N 0 -0.957 1.299 0.002
8 O2A O O2A N N N 0 -5.358 1.343 -0.91
9 O2B O O2B N N N 0 -7.358 -0.914 -1.492
10 C3 C C3 N N N 0 -0.086 1.87 0.798
11 O3A O O3A N N N 0 -5.392 -0.974 0.09
12 O3B O O3B N N N 0 -6.661 -3.17 -0.602
13 C4 C C4 N N N 0 -0.515 3.003 1.694
14 C5 C C5 N N N 0 1.343 1.393 0.817
15 C6 C C6 N N N 0 2.182 2.26 -0.124
16 C7 C C7 N N N 0 3.612 1.783 -0.105
17 C8 C C8 N N N 0 4.177 1.363 -1.21
18 C9 C C9 N N N 0 5.647 1.03 -1.225
19 C10 C C10 N N N 0 3.357 1.211 -2.465
20 C11 C C11 N N N 0 5.833 -0.47 -0.99
21 C12 C C12 N N N 0 7.303 -0.803 -1.006
22 C13 C C13 N N N 0 7.876 -1.286 0.068
23 C14 C C14 N N N 0 9.338 -1.65 0.043
24 C15 C C15 N N N 0 7.074 -1.476 1.33
25 F1 F F1 N N N 0 6.486 -2.746 1.321
26 F2 F F2 N N N 0 10.095 -0.578 0.526
27 H1 H H1 N N N 0 -2.681 2.273 -0.792
28 H1A H H1A N N N 0 -2.587 2.263 0.985
29 HO1A H HO1A N N N 0 -4.954 0.686 2.381
30 HO1B H HO1B N N N 0 -7.56 -1.822 1.758
31 H2 H H2 N N N 0 -0.631 0.556 -0.71
32 HO3B H HO3B N N N 0 -7.487 -3.613 -0.841
33 H4 H H4 N N N 0 -0.942 2.599 2.611
34 H4A H H4A N N N 0 0.35 3.62 1.937
35 H4B H H4B N N N 0 -1.261 3.609 1.181
36 H5 H H5 N N N 0 1.738 1.469 1.83
37 H5A H H5A N N N 0 1.384 0.355 0.488
38 H7 H H7 N N N 0 4.171 1.788 0.819
39 H6 H H6 N N N 0 1.788 2.184 -1.137
40 H6A H H6A N N N 0 2.141 3.298 0.205
41 H9 H H9 N N N 0 6.07 1.302 -2.192
42 H9A H H9A N N N 0 6.153 1.587 -0.437
43 H10 H H10 N N N 0 3.288 2.173 -2.973
44 H10A H H10A N N N 0 3.833 0.486 -3.125
45 H10B H H10B N N N 0 2.356 0.864 -2.206
46 H11 H H11 N N N 0 5.409 -0.742 -0.024
47 H11A H H11A N N N 0 5.326 -1.027 -1.779
48 H12 H H12 N N N 0 7.883 -0.642 -1.902
49 H14 H H14 N N N 0 9.505 -2.526 0.67
50 H14A H H14A N N N 0 9.639 -1.875 -0.981
51 H15 H H15 N N N 0 7.731 -1.385 2.195
52 H15A H H15A N N N 0 6.295 -0.716 1.384