Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : DTP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 46


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 PG P PG N N N 0 1.173 -0.253 -6.699
2 O1G O O1G N N N 0 1.947 0.979 -6.431
3 O2G O O2G N N N 0 1.949 -1.148 -7.789
4 O3G O O3G N N N 0 -0.281 0.139 -7.265
5 PB P PB S N N 0 0.229 -0.141 -4.295
6 O1B O O1B N N N 0 -1.094 0.217 -4.853
7 O2B O O2B N N N 0 1.086 1.197 -4.043
8 O3B O O3B N N N 0 1.009 -1.092 -5.334
9 PA P PA S N N 0 -0.752 0.082 -1.914
10 O1A O O1A N N N 0 0.05 1.309 -1.72
11 O2A O O2A N N N 0 -2.175 0.468 -2.561
12 O3A O O3A N N N 0 0.029 -0.921 -2.9
13 O5' O O5* N N N 0 -0.987 -0.636 -0.493
14 C5' C C5* N N N 0 -1.682 0.298 0.333
15 C4' C C4* R N N 0 -1.937 -0.325 1.707
16 O4' O O4* N N N 0 -0.692 -0.555 2.404
17 C3' C C3* S N N 0 -2.691 0.669 2.626
18 O3' O O3* N N N 0 -4.103 0.577 2.428
19 C2' C C2* N N N 0 -2.298 0.168 4.037
20 C1' C C1* R N N 0 -1.009 -0.643 3.804
21 N9 N N9 N Y N 0 0.084 -0.078 4.598
22 C8 C C8 N Y N 0 0.949 0.898 4.201
23 N7 N N7 N Y N 0 1.794 1.157 5.156
24 C5 C C5 N Y N 0 1.524 0.37 6.225
25 C6 C C6 N Y N 0 2.091 0.206 7.5
26 N6 N N6 N N N 0 3.176 0.968 7.895
27 N1 N N1 N Y N 0 1.558 -0.694 8.319
28 C2 C C2 N Y N 0 0.523 -1.426 7.95
29 N3 N N3 N Y N 0 -0.036 -1.31 6.764
30 C4 C C4 N Y N 0 0.427 -0.436 5.878
31 HOG2 H 2HOG N N N 0 2.026 -0.61 -8.588
32 HOG3 H 3HOG N N N 0 -0.752 -0.69 -7.426
33 HOB2 H 2HOB N N N 0 1.939 0.919 -3.681
34 HOA2 H 2HOA N N N 0 -2.666 -0.357 -2.67
35 H5'1 H 1H5* N N N 0 -2.634 0.557 -0.13
36 H5'2 H 2H5* N N N 0 -1.078 1.199 0.45
37 H4' H H4* N N N 0 -2.497 -1.255 1.606
38 H3' H H3* N N N 0 -2.343 1.689 2.464
39 HO3' H *HO3 N N N 0 -4.516 1.149 3.09
40 H2'1 H 1H2* N N N 0 -3.081 -0.469 4.447
41 H2'2 H 2H2* N N N 0 -2.104 1.01 4.701
42 H1' H H1* N N N 0 -1.17 -1.684 4.083
43 H8 H H8 N N N 0 0.934 1.384 3.237
44 HN61 H 1HN6 N N N 0 3.557 0.849 8.78
45 HN62 H 2HN6 N N N 0 3.559 1.62 7.287
46 H2 H H2 N N N 0 0.121 -2.146 8.647