data_DTP
#
_chem_comp.id DTP
_chem_comp.name "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H16 N5 O12 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 491.182
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DTP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1CR2
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DTP PG PG P 0 1 N N N N N N -11.748 26.547 38.800 1.173 -0.253 -6.699 PG DTP 1
DTP O1G O1G O 0 1 N N N N N N -11.483 27.643 37.837 1.947 0.979 -6.431 O1G DTP 2
DTP O2G O2G O 0 1 N N N N N N -11.412 25.377 38.122 1.949 -1.148 -7.789 O2G DTP 3
DTP O3G O3G O 0 1 N N N N N N -13.220 26.528 39.300 -0.281 0.139 -7.265 O3G DTP 4
DTP PB PB P 0 1 N N S N N N -9.548 27.482 40.751 0.229 -0.141 -4.295 PB DTP 5
DTP O1B O1B O 0 1 N N N N N N -9.464 28.801 40.014 -1.094 0.217 -4.853 O1B DTP 6
DTP O2B O2B O 0 1 N N N N N N -8.389 26.700 40.901 1.086 1.197 -4.043 O2B DTP 7
DTP O3B O3B O 0 1 N N N N N N -10.705 26.514 40.141 1.009 -1.092 -5.334 O3B DTP 8
DTP PA PA P 0 1 N N S N N N -10.606 29.315 42.745 -0.752 0.082 -1.914 PA DTP 9
DTP O1A O1A O 0 1 N N N N N N -9.347 30.073 42.682 0.050 1.309 -1.720 O1A DTP 10
DTP O2A O2A O 0 1 N N N N N N -11.732 29.919 42.083 -2.175 0.468 -2.561 O2A DTP 11
DTP O3A O3A O 0 1 N N N N N N -10.102 27.862 42.226 0.029 -0.921 -2.900 O3A DTP 12
DTP "O5'" O5* O 0 1 N N N N N N -10.980 29.093 44.168 -0.987 -0.636 -0.493 "O5'" DTP 13
DTP "C5'" C5* C 0 1 N N N N N N -12.248 28.456 44.515 -1.682 0.298 0.333 "C5'" DTP 14
DTP "C4'" C4* C 0 1 N N R N N N -12.841 28.745 45.914 -1.937 -0.325 1.707 "C4'" DTP 15
DTP "O4'" O4* O 0 1 N N N N N N -12.105 28.089 46.970 -0.692 -0.555 2.404 "O4'" DTP 16
DTP "C3'" C3* C 0 1 N N S N N N -12.932 30.206 46.316 -2.691 0.669 2.626 "C3'" DTP 17
DTP "O3'" O3* O 0 1 N N N N N N -14.235 30.509 46.776 -4.103 0.577 2.428 "O3'" DTP 18
DTP "C2'" C2* C 0 1 N N N N N N -11.873 30.406 47.390 -2.298 0.168 4.037 "C2'" DTP 19
DTP "C1'" C1* C 0 1 N N R N N N -11.463 29.013 47.817 -1.009 -0.643 3.804 "C1'" DTP 20
DTP N9 N9 N 0 1 Y N N N N N -10.033 28.765 47.706 0.084 -0.078 4.598 N9 DTP 21
DTP C8 C8 C 0 1 Y N N N N N -9.050 29.022 46.820 0.949 0.898 4.201 C8 DTP 22
DTP N7 N7 N 0 1 Y N N N N N -7.876 28.588 47.191 1.794 1.157 5.156 N7 DTP 23
DTP C5 C5 C 0 1 Y N N N N N -8.107 28.007 48.406 1.524 0.370 6.225 C5 DTP 24
DTP C6 C6 C 0 1 Y N N N N N -7.250 27.357 49.336 2.091 0.206 7.500 C6 DTP 25
DTP N6 N6 N 0 1 N N N N N N -5.951 27.183 49.146 3.176 0.968 7.895 N6 DTP 26
DTP N1 N1 N 0 1 Y N N N N N -7.799 26.889 50.477 1.558 -0.694 8.319 N1 DTP 27
DTP C2 C2 C 0 1 Y N N N N N -9.111 27.063 50.673 0.523 -1.426 7.950 C2 DTP 28
DTP N3 N3 N 0 1 Y N N N N N -10.001 27.653 49.870 -0.036 -1.310 6.764 N3 DTP 29
DTP C4 C4 C 0 1 Y N N N N N -9.423 28.118 48.751 0.427 -0.436 5.878 C4 DTP 30
DTP HOG2 2HOG H 0 0 N N N N N N -11.581 24.674 38.739 2.026 -0.610 -8.588 HOG2 DTP 31
DTP HOG3 3HOG H 0 0 N N N N N N -13.389 25.825 39.917 -0.752 -0.690 -7.426 HOG3 DTP 32
DTP HOB2 2HOB H 0 0 N N N N N N -8.441 25.872 41.363 1.939 0.919 -3.681 HOB2 DTP 33
DTP HOA2 2HOA H 0 0 N N N N N N -12.545 29.429 42.123 -2.666 -0.357 -2.670 HOA2 DTP 34
DTP "H5'1" 1H5* H 0 0 N N N N N N -13.007 28.702 43.736 -2.634 0.557 -0.130 "H5'1" DTP 35
DTP "H5'2" 2H5* H 0 0 N N N N N N -12.154 27.353 44.376 -1.078 1.199 0.450 "H5'2" DTP 36
DTP "H4'" H4* H 0 1 N N N N N N -13.875 28.345 45.800 -2.497 -1.255 1.606 "H4'" DTP 37
DTP "H3'" H3* H 0 1 N N N N N N -12.747 30.895 45.459 -2.343 1.689 2.464 "H3'" DTP 38
DTP "HO3'" *HO3 H 0 0 N N N N N N -14.291 31.423 47.027 -4.516 1.149 3.090 "HO3'" DTP 39
DTP "H2'1" 1H2* H 0 0 N N N N N N -11.019 31.044 47.064 -3.081 -0.469 4.447 "H2'1" DTP 40
DTP "H2'2" 2H2* H 0 0 N N N N N N -12.206 31.053 48.233 -2.104 1.010 4.701 "H2'2" DTP 41
DTP "H1'" H1* H 0 1 N N N N N N -11.748 28.908 48.889 -1.170 -1.684 4.083 "H1'" DTP 42
DTP H8 H8 H 0 1 N N N N N N -9.195 29.548 45.861 0.934 1.384 3.237 H8 DTP 43
DTP HN61 1HN6 H 0 0 N N N N N N -5.336 26.716 49.813 3.557 0.849 8.780 HN61 DTP 44
DTP HN62 2HN6 H 0 0 N N N N N N -5.549 28.101 48.959 3.559 1.620 7.287 HN62 DTP 45
DTP H2 H2 H 0 1 N N N N N N -9.511 26.668 51.621 0.121 -2.146 8.647 H2 DTP 46
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DTP PG O1G DOUB N N 1
DTP PG O2G SING N N 2
DTP PG O3G SING N N 3
DTP PG O3B SING N N 4
DTP O2G HOG2 SING N N 5
DTP O3G HOG3 SING N N 6
DTP PB O1B DOUB N N 7
DTP PB O2B SING N N 8
DTP PB O3B SING N N 9
DTP PB O3A SING N N 10
DTP O2B HOB2 SING N N 11
DTP PA O1A DOUB N N 12
DTP PA O2A SING N N 13
DTP PA O3A SING N N 14
DTP PA "O5'" SING N N 15
DTP O2A HOA2 SING N N 16
DTP "O5'" "C5'" SING N N 17
DTP "C5'" "C4'" SING N N 18
DTP "C5'" "H5'1" SING N N 19
DTP "C5'" "H5'2" SING N N 20
DTP "C4'" "O4'" SING N N 21
DTP "C4'" "C3'" SING N N 22
DTP "C4'" "H4'" SING N N 23
DTP "O4'" "C1'" SING N N 24
DTP "C3'" "O3'" SING N N 25
DTP "C3'" "C2'" SING N N 26
DTP "C3'" "H3'" SING N N 27
DTP "O3'" "HO3'" SING N N 28
DTP "C2'" "C1'" SING N N 29
DTP "C2'" "H2'1" SING N N 30
DTP "C2'" "H2'2" SING N N 31
DTP "C1'" N9 SING N N 32
DTP "C1'" "H1'" SING N N 33
DTP N9 C8 SING Y N 34
DTP N9 C4 SING Y N 35
DTP C8 N7 DOUB Y N 36
DTP C8 H8 SING N N 37
DTP N7 C5 SING Y N 38
DTP C5 C6 SING Y N 39
DTP C5 C4 DOUB Y N 40
DTP C6 N6 SING N N 41
DTP C6 N1 DOUB Y N 42
DTP N6 HN61 SING N N 43
DTP N6 HN62 SING N N 44
DTP N1 C2 SING Y N 45
DTP C2 N3 DOUB Y N 46
DTP C2 H2 SING N N 47
DTP N3 C4 SING Y N 48
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DTP SMILES ACDLabs 10.04 O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)CC3O
DTP SMILES_CANONICAL CACTVS 3.341 Nc1ncnc2n(cnc12)[C@H]3C[C@H](O)[C@@H](CO[P@@](O)(=O)O[P@](O)(=O)O[P](O)(O)=O)O3
DTP SMILES CACTVS 3.341 Nc1ncnc2n(cnc12)[CH]3C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3
DTP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1nc(c2c(n1)n(cn2)[C@H]3C[C@@H]([C@H](O3)CO[P@](=O)(O)O[P@@](=O)(O)OP(=O)(O)O)O)N
DTP SMILES "OpenEye OEToolkits" 1.5.0 c1nc(c2c(n1)n(cn2)C3CC(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)N
DTP InChI InChI 1.03 InChI=1S/C10H16N5O12P3/c11-9-8-10(13-3-12-9)15(4-14-8)7-1-5(16)6(25-7)2-24-29(20,21)27-30(22,23)26-28(17,18)19/h3-7,16H,1-2H2,(H,20,21)(H,22,23)(H2,11,12,13)(H2,17,18,19)/t5-,6+,7+/m0/s1
DTP InChIKey InChI 1.03 SUYVUBYJARFZHO-RRKCRQDMSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DTP "SYSTEMATIC NAME" ACDLabs 10.04 "2'-deoxyadenosine 5'-(tetrahydrogen triphosphate)"
DTP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[(2R,3S,5R)-5-(6-aminopurin-9-yl)-3-hydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] phosphono hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DTP 'Create component' 1999-07-08 EBI
DTP 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id DTP
_pdbe_chem_comp_drugbank_details.drugbank_id DB03222
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name dATP
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 1927-31-7
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
DTP "2'-Deoxyadenosine 5'-triphosphate" DrugBank ?
DTP dATP DrugBank ?
DTP "Deoxyadenosine 5'-triphosphate" DrugBank ?
DTP 'Deoxyadenosine triphosphate' DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id DTP
_pdbe_chem_comp_drugbank_classification.drugbank_id DB03222
_pdbe_chem_comp_drugbank_classification.parent "Purine 2'-deoxyribonucleoside triphosphates"
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Purine nucleotides'
_pdbe_chem_comp_drugbank_classification.superclass 'Nucleosides, nucleotides, and analogues'
_pdbe_chem_comp_drugbank_classification.description
"This compound belongs to the class of organic compounds known as purine 2'-deoxyribonucleoside triphosphates. These are purine nucleotides with triphosphate group  linked to the ribose moiety lacking a hydroxyl group at position 2."
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
DTP DB03222 'P2Y purinoceptor 11' Humans Q96G91 unknown 1
DTP DB03222 'Anaerobic ribonucleoside-triphosphate reductase' 'Enterobacteria phage T4' P07071 unknown 2
DTP DB03222 'Protein RecA' 'Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)' Q59560 unknown 3
DTP DB03222 'Protein RecA' 'Mycobacterium paratuberculosis (strain ATCC BAA-968 / K-10)' P62219 unknown 4
DTP DB03222 'DNA helicase/primase' 'Enterobacteria phage T7' P03692 unknown 5
DTP DB03222 'DNA polymerase beta' Humans P06746 unknown 6
DTP DB03222 'Ribonucleoside-diphosphate reductase 2 subunit alpha' 'Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)' Q08698 unknown 7
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
DTP PG P 8.660 7.728 1
DTP O1G O 8.199 9.155 2
DTP O2G O 10.088 8.189 3
DTP O3G O 7.233 7.267 4
DTP PB P 8.116 5.188 5
DTP O1B O 7.003 6.193 6
DTP O2B O 9.229 4.182 7
DTP O3B O 9.121 6.301 8
DTP PA P 7.571 2.647 9
DTP O1A O 8.998 3.108 10
DTP O2A O 6.144 2.186 11
DTP O3A O 7.110 4.075 12
DTP "O5'" O 8.032 1.220 13
DTP "C5'" C 7.027 0.107 14
DTP "C4'" C 7.487 -1.320 15
DTP "O4'" O 6.604 -2.532 16
DTP "C3'" C 8.913 -1.786 17
DTP "O3'" O 10.129 -0.907 18
DTP "C2'" C 8.911 -3.287 19
DTP "C1'" C 7.483 -3.748 20
DTP N9 N 7.018 -5.173 21
DTP C8 C 7.893 -6.380 22
DTP N7 N 7.018 -7.588 23
DTP C5 C 5.598 -7.130 24
DTP C6 C 4.299 -7.880 25
DTP N6 N 4.299 -9.380 26
DTP N1 N 3.000 -7.130 27
DTP C2 C 3.000 -5.630 28
DTP N3 N 4.299 -4.880 29
DTP C4 C 5.598 -5.630 30
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
DTP PG O1G DOUBLE NONE 1
DTP PG O2G SINGLE NONE 2
DTP PG O3G SINGLE NONE 3
DTP PG O3B SINGLE NONE 4
DTP PB O1B DOUBLE NONE 5
DTP PB O2B SINGLE BEGINWEDGE 6
DTP PB O3B SINGLE NONE 7
DTP PB O3A SINGLE NONE 8
DTP PA O1A DOUBLE NONE 9
DTP PA O2A SINGLE BEGINWEDGE 10
DTP PA O3A SINGLE NONE 11
DTP PA "O5'" SINGLE NONE 12
DTP "O5'" "C5'" SINGLE NONE 13
DTP "C4'" "C5'" SINGLE BEGINDASH 14
DTP "C4'" "O4'" SINGLE NONE 15
DTP "C4'" "C3'" SINGLE NONE 16
DTP "O4'" "C1'" SINGLE NONE 17
DTP "C3'" "O3'" SINGLE BEGINWEDGE 18
DTP "C3'" "C2'" SINGLE NONE 19
DTP "C2'" "C1'" SINGLE NONE 20
DTP "C1'" N9 SINGLE BEGINDASH 21
DTP N9 C8 SINGLE NONE 22
DTP N9 C4 SINGLE NONE 23
DTP C8 N7 DOUBLE NONE 24
DTP N7 C5 SINGLE NONE 25
DTP C5 C6 DOUBLE NONE 26
DTP C5 C4 SINGLE NONE 27
DTP C6 N6 SINGLE NONE 28
DTP C6 N1 SINGLE NONE 29
DTP N1 C2 DOUBLE NONE 30
DTP C2 N3 SINGLE NONE 31
DTP N3 C4 DOUBLE NONE 32
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
DTP MurckoScaffold S1 scaffold 'c1ncc2ncn([C@H]3CCCO3)c2n1' InChI=1S/C9H10N4O/c1-2-8(14-3-1)13-6-12-7-4-10-5-11-9(7)13/h4-6,8H,1-3H2/t8-/m1/s1 DAKONNSVCLKUJN-MRVPVSSYSA-N
DTP adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
DTP deoxyribose F2 fragment 'OCC1OC[CH2]C1O' InChI=1S/C5H10O3/c6-3-5-4(7)1-2-8-5/h4-7H,1-3H2 NSMOSDAEGJTOIQ-UHFFFAOYSA-N
DTP imidazole F3 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
DTP phosphate F4 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
DTP purine F5 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
DTP pyrimidine F6 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
DTP "C4'" S1 1
DTP "O4'" S1 1
DTP "C3'" S1 1
DTP "C2'" S1 1
DTP "C1'" S1 1
DTP N9 S1 1
DTP C8 S1 1
DTP N7 S1 1
DTP C5 S1 1
DTP C6 S1 1
DTP N1 S1 1
DTP C2 S1 1
DTP N3 S1 1
DTP C4 S1 1
DTP N1 F1 1
DTP C6 F1 1
DTP C5 F1 1
DTP C4 F1 1
DTP N3 F1 1
DTP C2 F1 1
DTP N9 F1 1
DTP C8 F1 1
DTP N7 F1 1
DTP N6 F1 1
DTP "C1'" F2 1
DTP "C2'" F2 1
DTP "C3'" F2 1
DTP "O3'" F2 1
DTP "C4'" F2 1
DTP "O4'" F2 1
DTP "C5'" F2 1
DTP "O5'" F2 1
DTP C5 F3 1
DTP C4 F3 1
DTP N9 F3 1
DTP C8 F3 1
DTP N7 F3 1
DTP O2G F4 1
DTP PG F4 1
DTP O1G F4 1
DTP O3G F4 1
DTP O3B F4 1
DTP O2B F4 2
DTP PB F4 2
DTP O1B F4 2
DTP O3B F4 2
DTP O3A F4 2
DTP O2A F4 3
DTP PA F4 3
DTP O1A F4 3
DTP O3A F4 3
DTP "O5'" F4 3
DTP N7 F5 1
DTP C8 F5 1
DTP N9 F5 1
DTP C4 F5 1
DTP C5 F5 1
DTP C6 F5 1
DTP N1 F5 1
DTP C2 F5 1
DTP N3 F5 1
DTP C5 F6 1
DTP C6 F6 1
DTP N1 F6 1
DTP C2 F6 1
DTP N3 F6 1
DTP C4 F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id DTP
_pdbe_chem_comp_rdkit_properties.exactmw 491.001
_pdbe_chem_comp_rdkit_properties.amw 491.183
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 17
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 17
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 30
_pdbe_chem_comp_rdkit_properties.NumAtoms 46
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 20
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 189.453
_pdbe_chem_comp_rdkit_properties.tpsa 258.900
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.409
_pdbe_chem_comp_rdkit_properties.CrippenMR 91.056
_pdbe_chem_comp_rdkit_properties.chi0v 16.160
_pdbe_chem_comp_rdkit_properties.chi1v 11.125
_pdbe_chem_comp_rdkit_properties.chi2v 6.203
_pdbe_chem_comp_rdkit_properties.chi3v 6.203
_pdbe_chem_comp_rdkit_properties.chi4v 4.411
_pdbe_chem_comp_rdkit_properties.chi0n 29.477
_pdbe_chem_comp_rdkit_properties.chi1n 14.179
_pdbe_chem_comp_rdkit_properties.chi2n 2.688
_pdbe_chem_comp_rdkit_properties.chi3n 2.688
_pdbe_chem_comp_rdkit_properties.chi4n 1.736
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.320
_pdbe_chem_comp_rdkit_properties.kappa1 10.084
_pdbe_chem_comp_rdkit_properties.kappa2 8.315
_pdbe_chem_comp_rdkit_properties.kappa3 5.675
_pdbe_chem_comp_rdkit_properties.Phi 2.795
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
DTP UniChem DrugBank DB03222
DTP UniChem 'Guide to Pharmacology' 1760
DTP UniChem 'KEGG LIGAND' C00131
DTP UniChem ChEBI 16284
DTP UniChem ZINC ZINC000008215662
DTP UniChem eMolecules 30512965
DTP UniChem fdasrs K8KCC8SH6N
DTP UniChem HMDB HMDB0001532
DTP UniChem PubChem 15993
DTP UniChem NMRShiftDB 60020396
DTP UniChem BindingDb 50118233
DTP UniChem 'EPA CompTox Dashboard' DTXSID10895848
DTP UniChem MetaboLights MTBLC16284
DTP UniChem BRENDA 114594
DTP UniChem BRENDA 140
DTP UniChem BRENDA 16322
DTP UniChem BRENDA 17780
DTP UniChem BRENDA 19887
DTP UniChem BRENDA 21908
DTP UniChem BRENDA 2704
DTP UniChem BRENDA 29926
DTP UniChem BRENDA 3585
DTP UniChem BRENDA 43122
DTP UniChem BRENDA 5893
DTP UniChem MedChemExpress HY-136648
DTP UniChem 'Probes And Drugs' PD052000
DTP UniChem Nikkaji J90.479A
DTP UniChem SureChEMBL SCHEMBL78250
DTP UniChem 'PubChem TPHARMA' 15455493
DTP UniChem ACTor 67460-17-7
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
DTP PG 4.264 2.257 -1.139 ETKDGv3 1
DTP O1G 3.295 2.199 0.021 ETKDGv3 2
DTP O2G 4.839 3.842 -1.289 ETKDGv3 3
DTP O3G 3.462 1.829 -2.568 ETKDGv3 4
DTP PB 5.039 -0.375 -0.992 ETKDGv3 5
DTP O1B 6.128 -1.294 -0.485 ETKDGv3 6
DTP O2B 4.753 -0.716 -2.628 ETKDGv3 7
DTP O3B 5.589 1.229 -0.843 ETKDGv3 8
DTP PA 2.914 -2.066 -0.528 ETKDGv3 9
DTP O1A 2.315 -1.923 -1.911 ETKDGv3 10
DTP O2A 4.055 -3.317 -0.538 ETKDGv3 11
DTP O3A 3.637 -0.600 -0.050 ETKDGv3 12
DTP "O5'" 1.680 -2.476 0.574 ETKDGv3 13
DTP "C5'" 0.839 -1.358 0.738 ETKDGv3 14
DTP "C4'" -0.361 -1.737 1.610 ETKDGv3 15
DTP "O4'" -1.139 -0.587 1.854 ETKDGv3 16
DTP "C3'" -1.241 -2.801 0.954 ETKDGv3 17
DTP "O3'" -0.910 -4.090 1.402 ETKDGv3 18
DTP "C2'" -2.621 -2.425 1.410 ETKDGv3 19
DTP "C1'" -2.499 -0.944 1.750 ETKDGv3 20
DTP N9 -3.143 -0.110 0.734 ETKDGv3 21
DTP C8 -2.807 -0.061 -0.672 ETKDGv3 22
DTP N7 -3.119 1.052 -1.281 ETKDGv3 23
DTP C5 -3.699 1.875 -0.280 ETKDGv3 24
DTP C6 -4.063 3.155 -0.325 ETKDGv3 25
DTP N6 -4.017 3.912 -1.534 ETKDGv3 26
DTP N1 -4.481 3.770 0.916 ETKDGv3 27
DTP C2 -4.462 3.103 2.047 ETKDGv3 28
DTP N3 -4.016 1.727 2.080 ETKDGv3 29
DTP C4 -3.695 1.174 0.950 ETKDGv3 30
DTP HOG2 4.042 4.378 -1.529 ETKDGv3 31
DTP HOG3 4.116 2.015 -3.288 ETKDGv3 32
DTP HOB2 5.595 -0.471 -3.088 ETKDGv3 33
DTP HOA2 3.536 -4.131 -0.757 ETKDGv3 34
DTP "H5'1" 1.391 -0.539 1.253 ETKDGv3 35
DTP "H5'2" 0.461 -0.980 -0.241 ETKDGv3 36
DTP "H4'" 0.013 -2.111 2.591 ETKDGv3 37
DTP "H3'" -1.196 -2.745 -0.160 ETKDGv3 38
DTP "HO3'" -0.136 -4.390 0.858 ETKDGv3 39
DTP "H2'1" -3.381 -2.626 0.622 ETKDGv3 40
DTP "H2'2" -2.897 -2.994 2.326 ETKDGv3 41
DTP "H1'" -2.991 -0.762 2.731 ETKDGv3 42
DTP H8 -2.312 -0.872 -1.187 ETKDGv3 43
DTP HN61 -4.297 4.918 -1.531 ETKDGv3 44
DTP HN62 -3.709 3.478 -2.433 ETKDGv3 45
DTP H2 -4.773 3.588 2.962 ETKDGv3 46
#