Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : DGB

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 58


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 OAA O OAA N N N 0 -4.329 -0.9 1.651
2 OAB O OAB N N N 0 7.398 1.584 -0.626
3 CAC C CAC N N N 0 -5.818 -0.057 0.076
4 CAD C CAD N N N 0 -6.867 -0.713 0.612
5 CAE C CAE N Y N 0 7.644 -3.374 -0.422
6 CAF C CAF N Y N 0 7.209 -2.833 0.775
7 CAG C CAG N Y N 0 7.748 -2.58 -1.55
8 CAH C CAH N Y N 0 -10.54 -1.087 -0.042
9 CAI C CAI N Y N 0 -10.65 -0.271 -1.153
10 CAJ C CAJ N Y N 0 -9.305 -1.251 0.56
11 CAK C CAK N Y N 0 6.877 -1.496 0.85
12 CAL C CAL N Y N 0 7.419 -1.241 -1.488
13 CAM C CAM N Y N 0 -8.401 0.232 -1.112
14 CAN C CAN N N N 0 -1.105 1.164 -0.061
15 CAO C CAO N N N 0 0.286 1.02 0.561
16 CAP C CAP N N N 0 -2.108 0.324 0.732
17 CAQ C CAQ N N N 0 1.289 1.86 -0.232
18 CAR C CAR N N N 0 3.657 2.652 -0.325
19 CAS C CAS N N N 0 3.156 0.27 0.246
20 CAT C CAT N N N 0 5.039 2.532 0.324
21 CAU C CAU N N N 0 4.533 0.123 0.901
22 NAV N NAV N Y N 0 -9.598 0.354 -1.647
23 NAW N NAW N N N 0 -3.439 0.461 0.136
24 CAX C CAX N N N 0 -4.488 -0.194 0.672
25 CAY C CAY N N N 0 6.624 0.744 -0.21
26 CAZ C CAZ N Y N 0 -8.205 -0.575 0.013
27 CBA C CBA N Y N 0 6.979 -0.689 -0.284
28 CBB C CBB N N N 0 2.679 1.717 0.391
29 NBC N NBC N N N 0 5.443 1.119 0.319
30 HAC H HAC N N N 0 -5.958 0.565 -0.795
31 HAD H HAD N N N 0 -6.727 -1.339 1.48
32 HAE H HAE N N N 0 7.907 -4.42 -0.475
33 HAF H HAF N N N 0 7.129 -3.458 1.651
34 HAG H HAG N N N 0 8.089 -3.008 -2.481
35 HAH H HAH N N N 0 -11.41 -1.589 0.355
36 HAI H HAI N N N 0 -11.613 -0.142 -1.624
37 HAJ H HAJ N N N 0 -9.191 -1.882 1.429
38 HAK H HAK N N N 0 6.537 -1.075 1.785
39 HAL H HAL N N N 0 7.501 -0.622 -2.369
40 HAM H HAM N N N 0 -7.564 0.759 -1.546
41 HAN H HAN N N N 0 -1.408 2.21 -0.037
42 HANA H HANA N N N 0 -1.077 0.817 -1.094
43 HAO H HAO N N N 0 0.259 1.367 1.594
44 HAOA H HAOA N N N 0 0.589 -0.026 0.537
45 HAP H HAP N N N 0 -1.805 -0.723 0.708
46 HAPA H HAPA N N N 0 -2.135 0.67 1.765
47 HAQ H HAQ N N N 0 1.316 1.514 -1.265
48 HAQA H HAQA N N N 0 0.986 2.907 -0.208
49 HAR H HAR N N N 0 3.304 3.68 -0.241
50 HARA H HARA N N N 0 3.723 2.374 -1.377
51 HAS H HAS N N N 0 3.227 0.014 -0.812
52 HASA H HASA N N N 0 2.447 -0.397 0.735
53 HAT H HAT N N N 0 5.761 3.12 -0.243
54 HATA H HATA N N N 0 4.995 2.895 1.35
55 HAU H HAU N N N 0 4.447 0.29 1.974
56 HAUA H HAUA N N N 0 4.921 -0.879 0.715
57 HNAW H HNAW N N N 0 -3.565 1.023 -0.644
58 HBB H HBB N N N 0 2.632 1.98 1.447