data_DGB
#
_chem_comp.id DGB
_chem_comp.name (2E)-N-{4-[1-(benzenecarbonyl)piperidin-4-yl]butyl}-3-(pyridin-3-yl)prop-2-enamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H29 N3 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms FK-866
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2006-03-09
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 391.506
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DGB
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2G97
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DGB OAA OAA O 0 1 N N N N N N 2.503 97.671 17.164 -4.329 -0.900 1.651 OAA DGB 1
DGB OAB OAB O 0 1 N N N N N N -5.957 103.053 13.135 7.398 1.584 -0.626 OAB DGB 2
DGB CAC CAC C 0 1 N N N N N N 4.310 98.154 15.916 -5.818 -0.057 0.076 CAC DGB 3
DGB CAD CAD C 0 1 N N N N N N 4.912 97.568 14.815 -6.867 -0.713 0.612 CAD DGB 4
DGB CAE CAE C 0 1 Y N N N N N -4.377 104.269 8.461 7.644 -3.374 -0.422 CAE DGB 5
DGB CAF CAF C 0 1 Y N N N N N -3.485 103.421 9.110 7.209 -2.833 0.775 CAF DGB 6
DGB CAG CAG C 0 1 Y N N N N N -5.460 104.804 9.156 7.748 -2.580 -1.550 CAG DGB 7
DGB CAH CAH C 0 1 Y N N N N N 8.217 96.581 13.501 -10.540 -1.087 -0.042 CAH DGB 8
DGB CAI CAI C 0 1 Y N N N N N 9.044 97.157 14.460 -10.650 -0.271 -1.153 CAI DGB 9
DGB CAJ CAJ C 0 1 Y N N N N N 6.841 96.772 13.591 -9.305 -1.251 0.560 CAJ DGB 10
DGB CAK CAK C 0 1 Y N N N N N -3.674 103.115 10.456 6.877 -1.496 0.850 CAK DGB 11
DGB CAL CAL C 0 1 Y N N N N N -5.653 104.497 10.498 7.419 -1.241 -1.488 CAL DGB 12
DGB CAM CAM C 0 1 Y N N N N N 7.200 98.040 15.564 -8.401 0.232 -1.112 CAM DGB 13
DGB CAN CAN C 0 1 N N N N N N 1.884 101.221 14.514 -1.105 1.164 -0.061 CAN DGB 14
DGB CAO CAO C 0 1 N N N N N N 0.366 101.273 14.731 0.286 1.020 0.561 CAO DGB 15
DGB CAP CAP C 0 1 N N N N N N 2.440 99.816 14.267 -2.108 0.324 0.732 CAP DGB 16
DGB CAQ CAQ C 0 1 N N N N N N -0.032 102.624 15.334 1.289 1.860 -0.232 CAQ DGB 17
DGB CAR CAR C 0 1 N N N N N N -2.606 102.552 15.310 3.657 2.652 -0.325 CAR DGB 18
DGB CAS CAS C 0 1 N N N N N N -1.360 103.428 13.314 3.156 0.270 0.246 CAS DGB 19
DGB CAT CAT C 0 1 N N N N N N -3.858 103.336 14.896 5.039 2.532 0.324 CAT DGB 20
DGB CAU CAU C 0 1 N N N N N N -2.592 104.232 12.891 4.533 0.123 0.901 CAU DGB 21
DGB NAV NAV N 0 1 Y N N N N N 8.511 97.867 15.441 -9.598 0.354 -1.647 NAV DGB 22
DGB NAW NAW N 0 1 N N N N N N 2.099 98.968 15.426 -3.439 0.461 0.136 NAW DGB 23
DGB CAX CAX C 0 1 N N N N N N 2.928 98.247 16.159 -4.488 -0.194 0.672 CAX DGB 24
DGB CAY CAY C 0 1 N N N N N N -4.880 103.403 12.654 6.624 0.744 -0.210 CAY DGB 25
DGB CAZ CAZ C 0 1 Y N N N N N 6.305 97.507 14.648 -8.205 -0.575 0.013 CAZ DGB 26
DGB CBA CBA C 0 1 Y N N N N N -4.752 103.654 11.149 6.979 -0.689 -0.284 CBA DGB 27
DGB CBB CBB C 0 1 N N N N N N -1.334 103.264 14.836 2.679 1.717 0.391 CBB DGB 28
DGB NBC NBC N 0 1 N N N N N N -3.820 103.610 13.439 5.443 1.119 0.319 NBC DGB 29
DGB HAC HAC H 0 1 N N N N N N 4.966 98.581 16.660 -5.958 0.565 -0.795 HAC DGB 30
DGB HAD HAD H 0 1 N N N N N N 4.282 97.139 14.050 -6.727 -1.339 1.480 HAD DGB 31
DGB HAE HAE H 0 1 N N N N N N -4.230 104.512 7.419 7.907 -4.420 -0.475 HAE DGB 32
DGB HAF HAF H 0 1 N N N N N N -2.648 103.001 8.572 7.129 -3.458 1.651 HAF DGB 33
DGB HAG HAG H 0 1 N N N N N N -6.153 105.460 8.650 8.089 -3.008 -2.481 HAG DGB 34
DGB HAH HAH H 0 1 N N N N N N 8.637 95.994 12.698 -11.410 -1.589 0.355 HAH DGB 35
DGB HAI HAI H 0 1 N N N N N N 10.114 97.025 14.404 -11.613 -0.142 -1.624 HAI DGB 36
DGB HAJ HAJ H 0 1 N N N N N N 6.188 96.350 12.841 -9.191 -1.882 1.429 HAJ DGB 37
DGB HAK HAK H 0 1 N N N N N N -2.982 102.458 10.962 6.537 -1.075 1.785 HAK DGB 38
DGB HAL HAL H 0 1 N N N N N N -6.496 104.909 11.034 7.501 -0.622 -2.369 HAL DGB 39
DGB HAM HAM H 0 1 N N N N N N 6.821 98.611 16.399 -7.564 0.759 -1.546 HAM DGB 40
DGB HAN HAN H 0 1 N N N N N N 2.129 101.846 13.642 -1.408 2.210 -0.037 HAN DGB 41
DGB HANA HANA H 0 0 N N N N N N 2.374 101.632 15.409 -1.077 0.817 -1.094 HANA DGB 42
DGB HAO HAO H 0 1 N N N N N N -0.145 101.141 13.766 0.259 1.367 1.594 HAO DGB 43
DGB HAOA HAOA H 0 0 N N N N N N 0.068 100.466 15.417 0.589 -0.026 0.537 HAOA DGB 44
DGB HAP HAP H 0 1 N N N N N N 1.993 99.395 13.355 -1.805 -0.723 0.708 HAP DGB 45
DGB HAPA HAPA H 0 0 N N N N N N 3.533 99.864 14.151 -2.135 0.670 1.765 HAPA DGB 46
DGB HAQ HAQ H 0 1 N N N N N N -0.128 102.485 16.421 1.316 1.514 -1.265 HAQ DGB 47
DGB HAQA HAQA H 0 0 N N N N N N 0.784 103.331 15.125 0.986 2.907 -0.208 HAQA DGB 48
DGB HAR HAR H 0 1 N N N N N N -2.582 102.464 16.406 3.304 3.680 -0.241 HAR DGB 49
DGB HARA HARA H 0 0 N N N N N N -2.645 101.548 14.862 3.723 2.374 -1.377 HARA DGB 50
DGB HAS HAS H 0 1 N N N N N N -1.394 102.435 12.842 3.227 0.014 -0.812 HAS DGB 51
DGB HASA HASA H 0 0 N N N N N N -0.452 103.957 12.990 2.447 -0.397 0.735 HASA DGB 52
DGB HAT HAT H 0 1 N N N N N N -4.754 102.744 15.133 5.761 3.120 -0.243 HAT DGB 53
DGB HATA HATA H 0 0 N N N N N N -3.891 104.288 15.446 4.995 2.895 1.350 HATA DGB 54
DGB HAU HAU H 0 1 N N N N N N -2.504 105.260 13.272 4.447 0.290 1.974 HAU DGB 55
DGB HAUA HAUA H 0 0 N N N N N N -2.654 104.252 11.793 4.921 -0.879 0.715 HAUA DGB 56
DGB HNAW HNAW H 0 0 N N N N N N 1.134 98.936 15.685 -3.565 1.023 -0.644 HNAW DGB 57
DGB HBB HBB H 0 1 N N N N N N -1.366 104.278 15.261 2.632 1.980 1.447 HBB DGB 58
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DGB OAA CAX DOUB N N 1
DGB OAB CAY DOUB N N 2
DGB CAC CAD DOUB N E 3
DGB CAC CAX SING N N 4
DGB CAD CAZ SING N N 5
DGB CAE CAF DOUB Y N 6
DGB CAE CAG SING Y N 7
DGB CAF CAK SING Y N 8
DGB CAG CAL DOUB Y N 9
DGB CAH CAI DOUB Y N 10
DGB CAH CAJ SING Y N 11
DGB CAI NAV SING Y N 12
DGB CAJ CAZ DOUB Y N 13
DGB CAK CBA DOUB Y N 14
DGB CAL CBA SING Y N 15
DGB CAM NAV DOUB Y N 16
DGB CAM CAZ SING Y N 17
DGB CAN CAO SING N N 18
DGB CAN CAP SING N N 19
DGB CAO CAQ SING N N 20
DGB CAP NAW SING N N 21
DGB CAQ CBB SING N N 22
DGB CAR CAT SING N N 23
DGB CAR CBB SING N N 24
DGB CAS CAU SING N N 25
DGB CAS CBB SING N N 26
DGB CAT NBC SING N N 27
DGB CAU NBC SING N N 28
DGB NAW CAX SING N N 29
DGB CAY CBA SING N N 30
DGB CAY NBC SING N N 31
DGB CAC HAC SING N N 32
DGB CAD HAD SING N N 33
DGB CAE HAE SING N N 34
DGB CAF HAF SING N N 35
DGB CAG HAG SING N N 36
DGB CAH HAH SING N N 37
DGB CAI HAI SING N N 38
DGB CAJ HAJ SING N N 39
DGB CAK HAK SING N N 40
DGB CAL HAL SING N N 41
DGB CAM HAM SING N N 42
DGB CAN HAN SING N N 43
DGB CAN HANA SING N N 44
DGB CAO HAO SING N N 45
DGB CAO HAOA SING N N 46
DGB CAP HAP SING N N 47
DGB CAP HAPA SING N N 48
DGB CAQ HAQ SING N N 49
DGB CAQ HAQA SING N N 50
DGB CAR HAR SING N N 51
DGB CAR HARA SING N N 52
DGB CAS HAS SING N N 53
DGB CAS HASA SING N N 54
DGB CAT HAT SING N N 55
DGB CAT HATA SING N N 56
DGB CAU HAU SING N N 57
DGB CAU HAUA SING N N 58
DGB NAW HNAW SING N N 59
DGB CBB HBB SING N N 60
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DGB SMILES ACDLabs 12.01 O=C(/C=C/c1cccnc1)NCCCCC2CCN(CC2)C(=O)c3ccccc3
DGB InChI InChI 1.03 InChI=1S/C24H29N3O2/c28-23(12-11-21-8-6-15-25-19-21)26-16-5-4-7-20-13-17-27(18-14-20)24(29)22-9-2-1-3-10-22/h1-3,6,8-12,15,19-20H,4-5,7,13-14,16-18H2,(H,26,28)/b12-11+
DGB InChIKey InChI 1.03 KPBNHDGDUADAGP-VAWYXSNFSA-N
DGB SMILES_CANONICAL CACTVS 3.385 O=C(NCCCCC1CCN(CC1)C(=O)c2ccccc2)\C=C\c3cccnc3
DGB SMILES CACTVS 3.385 O=C(NCCCCC1CCN(CC1)C(=O)c2ccccc2)C=Cc3cccnc3
DGB SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 c1ccc(cc1)C(=O)N2CCC(CC2)CCCCNC(=O)/C=C/c3cccnc3
DGB SMILES "OpenEye OEToolkits" 1.7.6 c1ccc(cc1)C(=O)N2CCC(CC2)CCCCNC(=O)C=Cc3cccnc3
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DGB "SYSTEMATIC NAME" ACDLabs 12.01 (2E)-N-{4-[1-(benzenecarbonyl)piperidin-4-yl]butyl}-3-(pyridin-3-yl)prop-2-enamide
DGB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 (E)-N-[4-[1-(phenylcarbonyl)piperidin-4-yl]butyl]-3-pyridin-3-yl-prop-2-enamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DGB 'Create component' 2006-03-09 RCSB
DGB 'Modify descriptor' 2011-06-04 RCSB
DGB 'Modify name' 2016-10-31 PDBJ
DGB 'Modify value order' 2016-10-31 PDBJ
DGB 'Other modification' 2016-10-31 PDBJ
DGB 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id DGB
_pdbx_chem_comp_synonyms.name FK-866
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id DGB
_pdbe_chem_comp_drugbank_details.drugbank_id DB12731
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Daporinad
_pdbe_chem_comp_drugbank_details.description
'Daporinad has been used in trials studying the treatment of Melanoma, Cutaneous T-cell Lymphoma, and B-cell Chronic Lymphocytic Leukemia.'
_pdbe_chem_comp_drugbank_details.cas_number 658084-64-1
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
DGB FK-866 wwPDB ?
DGB Daporinad DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id DGB
_pdbe_chem_comp_drugbank_classification.drugbank_id DB12731
_pdbe_chem_comp_drugbank_classification.parent 1-benzoylpiperidines
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Benzene and substituted derivatives'
_pdbe_chem_comp_drugbank_classification.superclass Benzenoids
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as 1-benzoylpiperidines. These are compounds containing a piperidine ring substituted at the 1-position with a benzoyl group.'
#
_pdbe_chem_comp_drugbank_targets.comp_id DGB
_pdbe_chem_comp_drugbank_targets.drugbank_id DB12731
_pdbe_chem_comp_drugbank_targets.name 'Nicotinamide phosphoribosyltransferase'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P43490
_pdbe_chem_comp_drugbank_targets.pharmacologically_active yes
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
DGB OAA O 12.093 3.000 1
DGB OAB O 8.196 -8.250 2
DGB CAC C 10.794 5.250 3
DGB CAD C 12.093 6.000 4
DGB CAE C 3.000 -9.750 5
DGB CAF C 3.000 -8.250 6
DGB CAG C 4.299 -10.500 7
DGB CAH C 13.392 9.750 8
DGB CAI C 12.093 10.500 9
DGB CAJ C 13.392 8.250 10
DGB CAK C 4.299 -7.500 11
DGB CAL C 5.598 -9.750 12
DGB CAM C 10.794 8.250 13
DGB CAN C 8.196 0.750 14
DGB CAO C 8.196 -0.750 15
DGB CAP C 9.495 1.500 16
DGB CAQ C 6.897 -1.500 17
DGB CAR C 5.598 -3.750 18
DGB CAS C 8.196 -3.750 19
DGB CAT C 5.598 -5.250 20
DGB CAU C 8.196 -5.250 21
DGB NAV N 10.794 9.750 22
DGB NAW N 9.495 3.000 23
DGB CAX C 10.794 3.750 24
DGB CAY C 6.897 -7.500 25
DGB CAZ C 12.093 7.500 26
DGB CBA C 5.598 -8.250 27
DGB CBB C 6.897 -3.000 28
DGB NBC N 6.897 -6.000 29
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
DGB OAA CAX DOUBLE NONE 1
DGB OAB CAY DOUBLE NONE 2
DGB CAC CAD DOUBLE NONE 3
DGB CAC CAX SINGLE ENDDOWNRIGHT 4
DGB CAD CAZ SINGLE ENDUPRIGHT 5
DGB CAE CAF DOUBLE NONE 6
DGB CAE CAG SINGLE NONE 7
DGB CAF CAK SINGLE NONE 8
DGB CAG CAL DOUBLE NONE 9
DGB CAH CAI DOUBLE NONE 10
DGB CAH CAJ SINGLE NONE 11
DGB CAI NAV SINGLE NONE 12
DGB CAJ CAZ DOUBLE NONE 13
DGB CAK CBA DOUBLE NONE 14
DGB CAL CBA SINGLE NONE 15
DGB CAM NAV DOUBLE NONE 16
DGB CAM CAZ SINGLE NONE 17
DGB CAN CAO SINGLE NONE 18
DGB CAN CAP SINGLE NONE 19
DGB CAO CAQ SINGLE NONE 20
DGB CAP NAW SINGLE NONE 21
DGB CAQ CBB SINGLE NONE 22
DGB CAR CAT SINGLE NONE 23
DGB CAR CBB SINGLE NONE 24
DGB CAS CAU SINGLE NONE 25
DGB CAS CBB SINGLE NONE 26
DGB CAT NBC SINGLE NONE 27
DGB CAU NBC SINGLE NONE 28
DGB NAW CAX SINGLE NONE 29
DGB CAY CBA SINGLE NONE 30
DGB CAY NBC SINGLE NONE 31
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
DGB MurckoScaffold S1 scaffold O=C(/C=C/c1cccnc1)NCCCCC1CCN(C(=O)c2ccccc2)CC1 InChI=1S/C24H29N3O2/c28-23(12-11-21-8-6-15-25-19-21)26-16-5-4-7-20-13-17-27(18-14-20)24(29)22-9-2-1-3-10-22/h1-3,6,8-12,15,19-20H,4-5,7,13-14,16-18H2,(H,26,28)/b12-11+ KPBNHDGDUADAGP-VAWYXSNFSA-N
DGB amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
DGB phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
DGB pyridine F3 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
DGB OAA S1 1
DGB OAB S1 1
DGB CAC S1 1
DGB CAD S1 1
DGB CAE S1 1
DGB CAF S1 1
DGB CAG S1 1
DGB CAH S1 1
DGB CAI S1 1
DGB CAJ S1 1
DGB CAK S1 1
DGB CAL S1 1
DGB CAM S1 1
DGB CAN S1 1
DGB CAO S1 1
DGB CAP S1 1
DGB CAQ S1 1
DGB CAR S1 1
DGB CAS S1 1
DGB CAT S1 1
DGB CAU S1 1
DGB NAV S1 1
DGB NAW S1 1
DGB CAX S1 1
DGB CAY S1 1
DGB CAZ S1 1
DGB CBA S1 1
DGB CBB S1 1
DGB NBC S1 1
DGB NAW F1 1
DGB CAX F1 1
DGB OAA F1 1
DGB CAC F1 1
DGB NBC F1 2
DGB CAY F1 2
DGB OAB F1 2
DGB CBA F1 2
DGB CAE F2 1
DGB CAF F2 1
DGB CAK F2 1
DGB CBA F2 1
DGB CAL F2 1
DGB CAG F2 1
DGB CAI F3 1
DGB CAH F3 1
DGB CAJ F3 1
DGB CAZ F3 1
DGB CAM F3 1
DGB NAV F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id DGB
_pdbe_chem_comp_rdkit_properties.exactmw 391.226
_pdbe_chem_comp_rdkit_properties.amw 391.515
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 29
_pdbe_chem_comp_rdkit_properties.NumAtoms 58
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.375
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 213.192
_pdbe_chem_comp_rdkit_properties.tpsa 62.300
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.824
_pdbe_chem_comp_rdkit_properties.CrippenMR 114.669
_pdbe_chem_comp_rdkit_properties.chi0v 14.158
_pdbe_chem_comp_rdkit_properties.chi1v 7.473
_pdbe_chem_comp_rdkit_properties.chi2v 2.727
_pdbe_chem_comp_rdkit_properties.chi3v 2.727
_pdbe_chem_comp_rdkit_properties.chi4v 1.549
_pdbe_chem_comp_rdkit_properties.chi0n 43.158
_pdbe_chem_comp_rdkit_properties.chi1n 21.921
_pdbe_chem_comp_rdkit_properties.chi2n 2.727
_pdbe_chem_comp_rdkit_properties.chi3n 2.727
_pdbe_chem_comp_rdkit_properties.chi4n 1.549
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.950
_pdbe_chem_comp_rdkit_properties.kappa1 5.022
_pdbe_chem_comp_rdkit_properties.kappa2 11.149
_pdbe_chem_comp_rdkit_properties.kappa3 6.859
_pdbe_chem_comp_rdkit_properties.Phi 1.931
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
DGB UniChem DrugBank DB12731
DGB UniChem 'Guide to Pharmacology' 7745
DGB UniChem ChEBI 187413
DGB UniChem ZINC ZINC000003828115
DGB UniChem fdasrs V71TF6V9M7
DGB UniChem Selleck apo866-fk866
DGB UniChem PubChem 6914657
DGB UniChem LINCS LSM-43216
DGB UniChem BindingDb 81395
DGB UniChem BRENDA 209455
DGB UniChem BRENDA 209499
DGB UniChem BRENDA 38151
DGB UniChem BRENDA 5788
DGB UniChem BRENDA 8703
DGB UniChem ChemicalBook CB62454096
DGB UniChem ClinicalTrials 'APO 866'
DGB UniChem ClinicalTrials APO-866
DGB UniChem ClinicalTrials APO866
DGB UniChem 'Probes And Drugs' PD003411
DGB UniChem Nikkaji J2.349.584H
DGB UniChem SureChEMBL SCHEMBL82368
DGB UniChem 'PubChem TPHARMA' 14780790
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
DGB OAA 4.483 -1.268 0.788 ETKDGv3 1
DGB OAB -4.516 -2.008 -2.804 ETKDGv3 2
DGB CAC 5.243 0.689 -0.273 ETKDGv3 3
DGB CAD 5.492 2.006 -0.206 ETKDGv3 4
DGB CAE -7.685 1.474 -0.980 ETKDGv3 5
DGB CAF -7.918 0.426 -1.779 ETKDGv3 6
DGB CAG -6.360 1.643 -0.352 ETKDGv3 7
DGB CAH 7.554 3.052 -3.271 ETKDGv3 8
DGB CAI 8.063 4.210 -2.840 ETKDGv3 9
DGB CAJ 6.668 2.274 -2.384 ETKDGv3 10
DGB CAK -6.854 -0.569 -2.026 ETKDGv3 11
DGB CAL -5.393 0.742 -0.572 ETKDGv3 12
DGB CAM 6.968 4.020 -0.721 ETKDGv3 13
DGB CAN 1.431 -0.806 1.794 ETKDGv3 14
DGB CAO 0.526 -1.465 2.843 ETKDGv3 15
DGB CAP 2.552 -0.003 2.461 ETKDGv3 16
DGB CAQ -0.487 -2.459 2.243 ETKDGv3 17
DGB CAR -2.910 -2.654 1.519 ETKDGv3 18
DGB CAS -1.226 -1.481 -0.033 ETKDGv3 19
DGB CAT -4.040 -2.037 0.687 ETKDGv3 20
DGB CAU -2.213 -2.011 -1.082 ETKDGv3 21
DGB NAV 7.744 4.690 -1.524 ETKDGv3 22
DGB NAW 3.365 0.673 1.452 ETKDGv3 23
DGB CAX 4.363 -0.017 0.679 ETKDGv3 24
DGB CAY -4.576 -1.424 -1.688 ETKDGv3 25
DGB CAZ 6.389 2.723 -1.144 ETKDGv3 26
DGB CBA -5.649 -0.436 -1.439 ETKDGv3 27
DGB CBB -1.634 -1.788 1.441 ETKDGv3 28
DGB NBC -3.594 -1.724 -0.680 ETKDGv3 29
DGB HAC 5.749 0.080 -1.010 ETKDGv3 30
DGB HAD 5.083 2.584 0.612 ETKDGv3 31
DGB HAE -8.464 2.203 -0.799 ETKDGv3 32
DGB HAF -8.888 0.303 -2.244 ETKDGv3 33
DGB HAG -6.169 2.503 0.277 ETKDGv3 34
DGB HAH 7.786 2.689 -4.264 ETKDGv3 35
DGB HAI 8.713 4.792 -3.481 ETKDGv3 36
DGB HAJ 6.238 1.360 -2.769 ETKDGv3 37
DGB HAK -7.067 -1.412 -2.672 ETKDGv3 38
DGB HAL -4.417 0.893 -0.128 ETKDGv3 39
DGB HAM 6.754 4.418 0.263 ETKDGv3 40
DGB HAN 0.832 -0.112 1.169 ETKDGv3 41
DGB HANA 1.874 -1.588 1.141 ETKDGv3 42
DGB HAO 1.164 -2.027 3.560 ETKDGv3 43
DGB HAOA -0.012 -0.682 3.423 ETKDGv3 44
DGB HAP 2.103 0.761 3.133 ETKDGv3 45
DGB HAPA 3.195 -0.666 3.080 ETKDGv3 46
DGB HAQ 0.037 -3.220 1.624 ETKDGv3 47
DGB HAQA -0.922 -3.013 3.105 ETKDGv3 48
DGB HAR -2.696 -3.681 1.148 ETKDGv3 49
DGB HARA -3.249 -2.737 2.574 ETKDGv3 50
DGB HAS -0.225 -1.897 -0.276 ETKDGv3 51
DGB HASA -1.155 -0.378 -0.159 ETKDGv3 52
DGB HAT -4.389 -1.112 1.190 ETKDGv3 53
DGB HATA -4.888 -2.754 0.648 ETKDGv3 54
DGB HAU -1.984 -1.534 -2.061 ETKDGv3 55
DGB HAUA -2.086 -3.109 -1.199 ETKDGv3 56
DGB HNAW 3.181 1.687 1.287 ETKDGv3 57
DGB HBB -1.885 -0.822 1.935 ETKDGv3 58
#