Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : DEX

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 57


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 -1.567 0.436 -3.311
2 C2 C C2 N N N 0 -1.448 0.818 -4.573
3 C3 C C3 N N N 0 -0.248 0.446 -5.341
4 C4 C C4 N N N 0 0.82 -0.298 -4.657
5 C5 C C5 N N N 0 0.682 -0.664 -3.39
6 C6 C C6 N N N 0 1.815 -1.412 -2.713
7 C7 C C7 N N N 0 2.144 -0.692 -1.401
8 C8 C C8 S N N 0 0.88 -0.574 -0.547
9 C9 C C9 R N N 0 -0.167 0.294 -1.262
10 C10 C C10 S N N 0 -0.55 -0.375 -2.585
11 C11 C C11 S N N 0 -1.422 0.501 -0.421
12 C12 C C12 N N N 0 -1.087 1.052 0.973
13 C13 C C13 S N N 0 -0.08 0.109 1.634
14 C14 C C14 S N N 0 1.208 0.102 0.77
15 C15 C C15 N N N 0 2.188 -0.646 1.679
16 C16 C C16 R N N 0 1.881 -0.055 3.082
17 C17 C C17 R N N 0 0.429 0.48 3.024
18 C18 C C18 N N N 0 -0.631 -1.317 1.636
19 C19 C C19 N N N 0 -1.193 -1.713 -2.216
20 C20 C C20 N N N 0 -0.388 -0.212 4.083
21 C21 C C21 N N N 0 -1.662 0.417 4.584
22 C22 C C22 N N N 0 2.851 1.086 3.394
23 F1 F F1 N N N 0 0.399 1.545 -1.527
24 O1 O O1 N N N 0 -0.143 0.748 -6.515
25 O2 O O2 N N N 0 -2.098 -0.749 -0.276
26 O3 O O3 N N N 0 0.381 1.896 3.208
27 O4 O O4 N N N 0 -0.023 -1.273 4.53
28 O5 O O5 N N N 0 -2.252 -0.424 5.577
29 H1 H H1 N N N 0 -2.457 0.731 -2.774
30 H2 H H2 N N N 0 -2.23 1.4 -5.038
31 H4 H H4 N N N 0 1.724 -0.55 -5.191
32 H61 H H61 N N N 0 2.692 -1.416 -3.36
33 H62 H H62 N N N 0 1.506 -2.436 -2.504
34 H11 H H11 N N N 0 -2.081 1.204 -0.931
35 H71 H H71 N N N 0 2.528 0.303 -1.62
36 H72 H H72 N N N 0 2.898 -1.26 -0.855
37 H8 H H8 N N N 0 0.469 -1.566 -0.359
38 H211 H 1H21 N N N 0 -1.996 1.136 1.568
39 H221 H 1H22 N N N 0 -0.61 2.028 0.882
40 H14 H H14 N N N 0 1.555 1.121 0.596
41 H511 H 1H51 N N N 0 3.218 -0.439 1.39
42 H521 H 1H52 N N N 0 1.989 -1.718 1.66
43 H16 H H16 N N N 0 1.963 -0.833 3.842
44 H811 H 1H81 N N N 0 -0.714 -1.676 0.61
45 H821 H 1H82 N N N 0 0.044 -1.966 2.194
46 H831 H 1H83 N N N 0 -1.614 -1.327 2.106
47 H911 H 1H91 N N N 0 -1.152 -2.385 -3.074
48 H921 H 1H92 N N N 0 -0.654 -2.157 -1.38
49 H931 H 1H93 N N N 0 -2.233 -1.55 -1.933
50 H112 H 2H11 N N N 0 -2.357 0.542 3.754
51 H122 H 2H12 N N N 0 -1.438 1.391 5.02
52 H212 H 2H21 N N N 0 3.87 0.701 3.419
53 H222 H 2H22 N N N 0 2.77 1.852 2.623
54 H232 H 2H23 N N N 0 2.602 1.519 4.363
55 HO2 H HO2 N N N 0 -2.885 -0.581 0.259
56 H3 H H3 N N N 0 0.713 2.074 4.099
57 H5 H H5 N N N 0 -3.062 0.014 5.87