Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : DAF

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 39


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 S N N 0 3.701 -0.894 0.36
2 O1 O O1 N N Y 0 4.209 -1.583 1.504
3 C2 C C2 R N N 0 3.479 0.58 0.708
4 O2 O O2 N N N 0 2.564 0.679 1.802
5 C3 C C3 S N N 0 2.901 1.309 -0.509
6 O3 O O3 N N N 0 3.815 1.211 -1.603
7 C4 C C4 S N N 0 1.566 0.658 -0.891
8 N4 N N4 N N N 0 0.572 0.911 0.161
9 C5 C C5 N N N 0 1.789 -0.832 -1.034
10 O5 O O5 N N N 0 2.455 -1.48 -0.036
11 C6 C C6 N N N 0 1.352 -1.485 -2.092
12 C1H C C1H S N N 0 -0.793 0.852 -0.379
13 C2H C C2H S N N 0 -1.708 1.725 0.477
14 O2H O O2H N N N 0 -1.594 1.336 1.847
15 C3H C C3H R N N 0 -3.159 1.543 0.011
16 O3H O O3H N N N 0 -3.266 1.858 -1.379
17 C4H C C4H N N N 0 -3.528 0.091 0.239
18 O4H O O4H N N N 0 -4.61 -0.217 0.692
19 C5H C C5H N N N 0 -2.525 -0.933 -0.109
20 C6H C C6H N N N 0 -1.256 -0.574 -0.389
21 C7H C C7H N N N 0 -2.912 -2.352 -0.152
22 O7H O O7H N N N 0 -4.052 -2.677 0.099
23 H1 H H1 N N N 0 4.416 -0.971 -0.459
24 HO1 H HO1 N N N 0 4.373 -2.525 1.356
25 H2 H H2 N N N 0 4.43 1.035 0.987
26 HO2 H HO2 N N N 0 2.865 0.238 2.608
27 H3 H H3 N N N 0 2.738 2.358 -0.262
28 HO3 H HO3 N N N 0 4.683 1.597 -1.426
29 H4 H H4 N N N 0 1.214 1.069 -1.837
30 HN4 H HN4 N N N 0 0.686 0.266 0.928
31 H6 H H6 N N N 0 0.826 -0.956 -2.873
32 H6A H H6A N N N 0 1.52 -2.548 -2.177
33 H1H H H1H N N N 0 -0.789 1.234 -1.4
34 H2H H H2H N N N 0 -1.42 2.771 0.37
35 HO2H H HO2H N N N 0 -2.15 1.849 2.45
36 H3H H H3H N N N 0 -3.819 2.189 0.59
37 HO3H H HO3H N N N 0 -4.16 1.763 -1.736
38 H6H H H6H N N N 0 -0.542 -1.348 -0.63
39 H7H H H7H N N N 0 -2.179 -3.103 -0.407