data_DAF
#
_chem_comp.id DAF
_chem_comp.name
4,6-dideoxy-4-{[(1S,5R,6S)-3-formyl-5,6-dihydroxy-4-oxocyclohex-2-en-1-yl]amino}-alpha-D-xylo-hex-5-enopyranose
_chem_comp.type "D-saccharide, alpha linking"
_chem_comp.pdbx_type ATOMS
_chem_comp.formula "C13 H17 N O8"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms
;4,6-dideoxy-4-{[(1S,5R,6S)-3-formyl-5,6-dihydroxy-4-oxocyclohex-2-en-1-yl]amino}-alpha-D-xylo-hex-5-enose;
4,6-dideoxy-4-{[(1S,5R,6S)-3-formyl-5,6-dihydroxy-4-oxocyclohex-2-en-1-yl]amino}-D-xylo-hex-5-enose;
4,6-dideoxy-4-{[(1S,5R,6S)-3-formyl-5,6-dihydroxy-4-oxocyclohex-2-en-1-yl]amino}-xylo-hex-5-enose
;
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2020-07-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 315.276
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DAF
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1BG9
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 DAF 4,6-dideoxy-4-{[(1S,5R,6S)-3-formyl-5,6-dihydroxy-4-oxocyclohex-2-en-1-yl]amino}-alpha-D-xylo-hex-5-enose PDB ?
2 DAF 4,6-dideoxy-4-{[(1S,5R,6S)-3-formyl-5,6-dihydroxy-4-oxocyclohex-2-en-1-yl]amino}-D-xylo-hex-5-enose PDB ?
3 DAF 4,6-dideoxy-4-{[(1S,5R,6S)-3-formyl-5,6-dihydroxy-4-oxocyclohex-2-en-1-yl]amino}-xylo-hex-5-enose PDB ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DAF C1 C1 C 0 1 N N S N N N 6.194 67.673 36.749 3.701 -0.894 0.360 C1 DAF 1
DAF O1 O1 O 0 1 N Y N N N N 7.247 66.714 36.916 4.209 -1.583 1.504 O1 DAF 2
DAF C2 C2 C 0 1 N N R N N N 4.853 67.029 36.438 3.479 0.580 0.708 C2 DAF 3
DAF O2 O2 O 0 1 N N N N N N 4.560 65.927 37.292 2.564 0.679 1.802 O2 DAF 4
DAF C3 C3 C 0 1 N N S N N N 4.835 66.551 34.975 2.901 1.309 -0.509 C3 DAF 5
DAF O3 O3 O 0 1 N N N N N N 3.626 65.818 34.766 3.815 1.211 -1.603 O3 DAF 6
DAF C4 C4 C 0 1 N N S N N N 4.942 67.805 34.072 1.566 0.658 -0.891 C4 DAF 7
DAF N4 N4 N 0 1 N N N N N N 4.864 67.448 32.674 0.572 0.911 0.161 N4 DAF 8
DAF C5 C5 C 0 1 N N N N N N 6.282 68.558 34.415 1.789 -0.832 -1.034 C5 DAF 9
DAF O5 O5 O 0 1 N N N N N N 6.601 68.706 35.813 2.455 -1.480 -0.036 O5 DAF 10
DAF C6 C6 C 0 1 N N N N N N 7.010 69.527 33.501 1.352 -1.485 -2.092 C6 DAF 11
DAF C1H C1H C 0 1 N N S N N N 3.751 67.944 31.881 -0.793 0.852 -0.379 C1H DAF 12
DAF C2H C2H C 0 1 N N S N N N 4.016 68.307 30.433 -1.708 1.725 0.477 C2H DAF 13
DAF O2H O2H O 0 1 N N N N N N 4.778 67.357 29.685 -1.594 1.336 1.847 O2H DAF 14
DAF C3H C3H C 0 1 N N R N N N 4.670 69.690 30.524 -3.159 1.543 0.011 C3H DAF 15
DAF O3H O3H O 0 1 N N N N N N 5.022 70.185 29.233 -3.266 1.858 -1.379 O3H DAF 16
DAF C4H C4H C 0 1 N N N N N N 3.716 70.701 31.253 -3.528 0.091 0.239 C4H DAF 17
DAF O4H O4H O 0 1 N N N N N N 3.927 72.104 31.112 -4.610 -0.217 0.692 O4H DAF 18
DAF C5H C5H C 0 1 N N N N N N 2.609 70.128 32.152 -2.525 -0.933 -0.109 C5H DAF 19
DAF C6H C6H C 0 1 N N N N N N 2.675 68.767 32.443 -1.256 -0.574 -0.389 C6H DAF 20
DAF C7H C7H C 0 1 N N N N N N 1.485 71.028 32.713 -2.912 -2.352 -0.152 C7H DAF 21
DAF O7H O7H O 0 1 N N N N N N 0.160 70.737 32.264 -4.052 -2.677 0.099 O7H DAF 22
DAF H1 H1 H 0 1 N N N N N N 6.065 68.170 37.722 4.416 -0.971 -0.459 H1 DAF 23
DAF HO1 HO1 H 0 1 N N N N N N 6.971 66.043 37.530 4.373 -2.525 1.356 HO1 DAF 24
DAF H2 H2 H 0 1 N N N N N N 4.072 67.795 36.552 4.430 1.035 0.987 H2 DAF 25
DAF HO2 HO2 H 0 1 N N N N N N 3.715 65.561 37.058 2.865 0.238 2.608 HO2 DAF 26
DAF H3 H3 H 0 1 N N N N N N 5.710 65.909 34.797 2.738 2.358 -0.262 H3 DAF 27
DAF HO3 HO3 H 0 1 N N N N N N 3.592 65.512 33.867 4.683 1.597 -1.426 HO3 DAF 28
DAF H4 H4 H 0 1 N N N N N N 4.108 68.477 34.323 1.214 1.069 -1.837 H4 DAF 29
DAF HN4 HN4 H 0 1 N N N N N N 5.703 67.777 32.240 0.686 0.266 0.928 HN4 DAF 30
DAF H6 H6 H 0 1 N N N N N N 7.699 70.247 33.917 0.826 -0.956 -2.873 H6 DAF 31
DAF H6A H6A H 0 1 N N N N N N 6.839 69.496 32.435 1.520 -2.548 -2.177 H6A DAF 32
DAF H1H H1H H 0 1 N N N N N N 3.201 67.004 31.729 -0.789 1.234 -1.400 H1H DAF 33
DAF H2H H2H H 0 1 N N N N N N 3.041 68.439 29.942 -1.420 2.771 0.370 H2H DAF 34
DAF HO2H HO2H H 0 0 N N N N N N 4.891 67.671 28.795 -2.150 1.849 2.450 HO2H DAF 35
DAF H3H H3H H 0 1 N N N N N N 5.579 69.594 31.136 -3.819 2.189 0.590 H3H DAF 36
DAF HO3H HO3H H 0 0 N N N N N N 4.833 71.115 29.188 -4.160 1.763 -1.736 HO3H DAF 37
DAF H6H H6H H 0 1 N N N N N N 1.932 68.317 33.084 -0.542 -1.348 -0.630 H6H DAF 38
DAF H7H H7H H 0 1 N N N N N N 1.689 71.831 33.405 -2.179 -3.103 -0.407 H7H DAF 39
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DAF O5 C1 SING N N 1
DAF C2 C1 SING N N 2
DAF C1 O1 SING N N 3
DAF C1 H1 SING N N 4
DAF O1 HO1 SING N N 5
DAF C3 C2 SING N N 6
DAF C2 O2 SING N N 7
DAF C2 H2 SING N N 8
DAF O2 HO2 SING N N 9
DAF C4 C3 SING N N 10
DAF O3 C3 SING N N 11
DAF C3 H3 SING N N 12
DAF O3 HO3 SING N N 13
DAF N4 C4 SING N N 14
DAF C4 C5 SING N N 15
DAF C4 H4 SING N N 16
DAF C1H N4 SING N N 17
DAF N4 HN4 SING N N 18
DAF C6 C5 DOUB N N 19
DAF C5 O5 SING N N 20
DAF C6 H6 SING N N 21
DAF C6 H6A SING N N 22
DAF C2H C1H SING N N 23
DAF C1H C6H SING N N 24
DAF C1H H1H SING N N 25
DAF O2H C2H SING N N 26
DAF C2H C3H SING N N 27
DAF C2H H2H SING N N 28
DAF O2H HO2H SING N N 29
DAF O3H C3H SING N N 30
DAF C3H C4H SING N N 31
DAF C3H H3H SING N N 32
DAF O3H HO3H SING N N 33
DAF O4H C4H DOUB N N 34
DAF C4H C5H SING N N 35
DAF C5H C6H DOUB N N 36
DAF C5H C7H SING N N 37
DAF C6H H6H SING N N 38
DAF O7H C7H DOUB N N 39
DAF C7H H7H SING N N 40
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DAF SMILES ACDLabs 12.01 O=CC2=CC(NC1C(/OC(O)C(O)C1O)=C)C(O)C(O)C2=O
DAF InChI InChI 1.03 InChI=1S/C13H17NO8/c1-4-7(10(18)12(20)13(21)22-4)14-6-2-5(3-15)8(16)11(19)9(6)17/h2-3,6-7,9-14,17-21H,1H2/t6-,7+,9-,10-,11-,12+,13-/m0/s1
DAF InChIKey InChI 1.03 ZGWNRGISVMYHTF-KKXLKBQTSA-N
DAF SMILES_CANONICAL CACTVS 3.370 O[C@H]1OC(=C)[C@@H](N[C@H]2C=C(C=O)C(=O)[C@H](O)[C@H]2O)[C@H](O)[C@H]1O
DAF SMILES CACTVS 3.370 O[CH]1OC(=C)[CH](N[CH]2C=C(C=O)C(=O)[CH](O)[CH]2O)[CH](O)[CH]1O
DAF SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 C=C1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)N[C@H]2C=C(C(=O)[C@@H]([C@H]2O)O)C=O
DAF SMILES "OpenEye OEToolkits" 1.7.6 C=C1C(C(C(C(O1)O)O)O)NC2C=C(C(=O)C(C2O)O)C=O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DAF "SYSTEMATIC NAME" ACDLabs 12.01 4,6-dideoxy-4-{[(1S,5R,6S)-3-formyl-5,6-dihydroxy-4-oxocyclohex-2-en-1-yl]amino}-alpha-D-xylo-hex-5-enopyranose
DAF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6
;(3S,4S,5R)-3-[[(3S,4S,5R,6S)-2-methylidene-4,5,6-tris(oxidanyl)oxan-3-yl]amino]-4,5-bis(oxidanyl)-6-oxidanylidene-cyclo
hexene-1-carbaldehyde
;
#
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
DAF "CARBOHYDRATE ISOMER" D PDB ?
DAF "CARBOHYDRATE RING" pyranose PDB ?
DAF "CARBOHYDRATE ANOMER" alpha PDB ?
DAF "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DAF 'Create component' 1999-07-08 RCSB
DAF 'Modify descriptor' 2011-06-04 RCSB
DAF 'Other modification' 2012-12-22 RCSB
DAF 'Modify leaving atom flag' 2019-09-17 PDBE
DAF 'Other modification' 2020-07-03 RCSB
DAF 'Modify synonyms' 2020-07-17 RCSB
DAF 'Modify linking type' 2020-07-17 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id DAF
_pdbe_chem_comp_drugbank_details.drugbank_id DB04164
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name
'4,6-Dideoxy-4-{[(1S,5R,6S)-3-formyl-5,6-dihydroxy-4-oxo-2-cyclohexen-1-yl]amino}-α-D-xylo-hex-5-enopyranose'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
DAF '4,6-dideoxy-4-{[(1S,5R,6S)-3-formyl-5,6-dihydroxy-4-oxocyclohex-2-en-1-yl]amino}-alpha-D-xylo-hex-5-enose' wwPDB ?
DAF '4,6-dideoxy-4-{[(1S,5R,6S)-3-formyl-5,6-dihydroxy-4-oxocyclohex-2-en-1-yl]amino}-D-xylo-hex-5-enose' wwPDB ?
DAF '4,6-dideoxy-4-{[(1S,5R,6S)-3-formyl-5,6-dihydroxy-4-oxocyclohex-2-en-1-yl]amino}-xylo-hex-5-enose' wwPDB ?
DAF 1,4-Deoxy-4-((5-Hydroxymethyl-2,3,4-Trihydroxycyclohex-5-Enyl)Amino)Fructose DrugBank ?
DAF '4,6-Dideoxy-4-{[(1S,5R,6S)-3-formyl-5,6-dihydroxy-4-oxo-2-cyclohexen-1-yl]amino}-α-D-xylo-hex-5-enopyranose' DrugBank ?
DAF '4,6-Dideoxy-4-{[(1s,5r,6s)-3-formyl-5,6-dihydroxy-4-oxocyclohex-2-en-1-yl]amino}-alpha-d-xylo-hex-5-enopyranose' DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id DAF
_pdbe_chem_comp_drugbank_classification.drugbank_id DB04164
_pdbe_chem_comp_drugbank_classification.parent 'N-linked disaccharides'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Organooxygen compounds'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic oxygen compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as n-linked disaccharides. These are compounds containing two carbohydrate moieties linked to each to each other through a N-glycosidic bond.'
#
_pdbe_chem_comp_drugbank_targets.comp_id DAF
_pdbe_chem_comp_drugbank_targets.drugbank_id DB04164
_pdbe_chem_comp_drugbank_targets.name Alpha-amylase
_pdbe_chem_comp_drugbank_targets.organism 'Pseudoalteromonas haloplanktis'
_pdbe_chem_comp_drugbank_targets.uniprot_id P29957
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
DAF C1 C 10.301 3.285 1
DAF O1 O 11.600 4.035 2
DAF C2 C 10.301 1.785 3
DAF O2 O 11.600 1.035 4
DAF C3 C 9.002 1.035 5
DAF O3 O 9.002 -0.465 6
DAF C4 C 7.702 1.785 7
DAF N4 N 6.404 1.035 8
DAF C5 C 7.702 3.285 9
DAF O5 O 9.002 4.035 10
DAF C6 C 6.404 4.035 11
DAF C1H C 6.404 -0.465 12
DAF C2H C 5.104 -1.215 13
DAF O2H O 3.805 -0.465 14
DAF C3H C 5.104 -2.715 15
DAF O3H O 3.805 -3.465 16
DAF C4H C 6.404 -3.465 17
DAF O4H O 6.404 -4.965 18
DAF C5H C 7.702 -2.715 19
DAF C6H C 7.702 -1.215 20
DAF C7H C 9.002 -3.465 21
DAF O7H O 9.002 -4.965 22
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
DAF O5 C1 SINGLE NONE 1
DAF C2 C1 SINGLE NONE 2
DAF C1 O1 SINGLE BEGINDASH 3
DAF C3 C2 SINGLE NONE 4
DAF C2 O2 SINGLE BEGINDASH 5
DAF C4 C3 SINGLE NONE 6
DAF C3 O3 SINGLE BEGINWEDGE 7
DAF C4 N4 SINGLE BEGINDASH 8
DAF C4 C5 SINGLE NONE 9
DAF C1H N4 SINGLE BEGINWEDGE 10
DAF C6 C5 DOUBLE NONE 11
DAF C5 O5 SINGLE NONE 12
DAF C2H C1H SINGLE NONE 13
DAF C1H C6H SINGLE NONE 14
DAF C2H O2H SINGLE BEGINWEDGE 15
DAF C2H C3H SINGLE NONE 16
DAF C3H O3H SINGLE BEGINDASH 17
DAF C3H C4H SINGLE NONE 18
DAF O4H C4H DOUBLE NONE 19
DAF C4H C5H SINGLE NONE 20
DAF C5H C6H DOUBLE NONE 21
DAF C5H C7H SINGLE NONE 22
DAF O7H C7H DOUBLE NONE 23
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
DAF MurckoScaffold S1 scaffold 'C=C1OCCC[C@@H]1N[C@H]1C=CC(=O)CC1' InChI=1S/C12H17NO2/c1-9-12(3-2-8-15-9)13-10-4-6-11(14)7-5-10/h4,6,10,12-13H,1-3,5,7-8H2/t10-,12-/m0/s1 KIODFNIQXWJDEZ-JQWIXIFHSA-N
DAF pyranose F1 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
DAF C1 S1 1
DAF C2 S1 1
DAF C3 S1 1
DAF C4 S1 1
DAF N4 S1 1
DAF C5 S1 1
DAF O5 S1 1
DAF C6 S1 1
DAF C1H S1 1
DAF C2H S1 1
DAF C3H S1 1
DAF C4H S1 1
DAF O4H S1 1
DAF C5H S1 1
DAF C6H S1 1
DAF C4 F1 1
DAF C5 F1 1
DAF O5 F1 1
DAF C1 F1 1
DAF C2 F1 1
DAF C3 F1 1
DAF O1 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id DAF
_pdbe_chem_comp_rdkit_properties.exactmw 315.095
_pdbe_chem_comp_rdkit_properties.amw 315.278
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 22
_pdbe_chem_comp_rdkit_properties.NumAtoms 39
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.538
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 7
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 149.061
_pdbe_chem_comp_rdkit_properties.tpsa 156.550
_pdbe_chem_comp_rdkit_properties.CrippenClogP -3.673
_pdbe_chem_comp_rdkit_properties.CrippenMR 70.125
_pdbe_chem_comp_rdkit_properties.chi0v 10.213
_pdbe_chem_comp_rdkit_properties.chi1v 5.284
_pdbe_chem_comp_rdkit_properties.chi2v 2.440
_pdbe_chem_comp_rdkit_properties.chi3v 2.440
_pdbe_chem_comp_rdkit_properties.chi4v 1.411
_pdbe_chem_comp_rdkit_properties.chi0n 27.213
_pdbe_chem_comp_rdkit_properties.chi1n 13.273
_pdbe_chem_comp_rdkit_properties.chi2n 2.440
_pdbe_chem_comp_rdkit_properties.chi3n 2.440
_pdbe_chem_comp_rdkit_properties.chi4n 1.411
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.620
_pdbe_chem_comp_rdkit_properties.kappa1 5.196
_pdbe_chem_comp_rdkit_properties.kappa2 6.244
_pdbe_chem_comp_rdkit_properties.kappa3 2.819
_pdbe_chem_comp_rdkit_properties.Phi 1.475
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
DAF UniChem DrugBank DB04164
DAF UniChem ZINC ZINC000098208787
DAF UniChem PubChem 129856752
DAF UniChem 'Probes And Drugs' PD059359
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
DAF C1 3.894 0.225 -0.129 ETKDGv3 1
DAF O1 3.950 0.146 1.272 ETKDGv3 2
DAF C2 2.835 1.241 -0.585 ETKDGv3 3
DAF O2 3.134 2.514 -0.073 ETKDGv3 4
DAF C3 1.449 0.793 -0.089 ETKDGv3 5
DAF O3 0.485 1.717 -0.528 ETKDGv3 6
DAF C4 1.055 -0.633 -0.579 ETKDGv3 7
DAF N4 0.197 -1.309 0.430 ETKDGv3 8
DAF C5 2.276 -1.503 -0.888 ETKDGv3 9
DAF O5 3.583 -1.058 -0.654 ETKDGv3 10
DAF C6 2.125 -2.696 -1.468 ETKDGv3 11
DAF C1H -1.223 -0.892 0.557 ETKDGv3 12
DAF C2H -2.050 -0.871 -0.757 ETKDGv3 13
DAF O2H -1.649 0.187 -1.590 ETKDGv3 14
DAF C3H -3.541 -0.663 -0.403 ETKDGv3 15
DAF O3H -4.058 -1.794 0.248 ETKDGv3 16
DAF C4H -3.708 0.540 0.497 ETKDGv3 17
DAF O4H -4.834 1.104 0.544 ETKDGv3 18
DAF C5H -2.580 1.034 1.344 ETKDGv3 19
DAF C6H -1.402 0.383 1.339 ETKDGv3 20
DAF C7H -2.716 2.246 2.182 ETKDGv3 21
DAF O7H -3.786 2.908 2.209 ETKDGv3 22
DAF H1 4.890 0.524 -0.529 ETKDGv3 23
DAF HO1 4.472 0.931 1.584 ETKDGv3 24
DAF H2 2.819 1.278 -1.700 ETKDGv3 25
DAF HO2 3.893 2.866 -0.608 ETKDGv3 26
DAF H3 1.482 0.783 1.026 ETKDGv3 27
DAF HO3 0.492 2.476 0.111 ETKDGv3 28
DAF H4 0.537 -0.548 -1.551 ETKDGv3 29
DAF HN4 0.186 -2.341 0.258 ETKDGv3 30
DAF H6 1.146 -3.075 -1.730 ETKDGv3 31
DAF H6A 2.992 -3.299 -1.708 ETKDGv3 32
DAF H1H -1.699 -1.667 1.203 ETKDGv3 33
DAF H2H -1.918 -1.846 -1.283 ETKDGv3 34
DAF HO2H -1.963 -0.033 -2.506 ETKDGv3 35
DAF H3H -4.116 -0.483 -1.341 ETKDGv3 36
DAF HO3H -4.170 -2.497 -0.444 ETKDGv3 37
DAF H6H -0.595 0.726 1.973 ETKDGv3 38
DAF H7H -1.883 2.584 2.787 ETKDGv3 39
#