Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : D6A

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 33


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C1 N Y N 0 -1.866 1.352 -0.194
2 C5 C C2 N Y N 0 -1.043 0.257 0.058
3 C6 C C3 N Y N 0 0.43 0.427 0.107
4 N1 N N1 N Y N 0 1.089 1.543 -0.066
5 C7 C C4 N Y N 0 2.509 0.052 0.293
6 C8 C C5 R N N 0 3.854 -0.597 0.489
7 N2 N N2 N N N 0 4.759 0.294 1.26
8 C9 C C6 N N N 0 4.587 -0.759 -0.867
9 C10 C C7 R N N 0 6.074 -0.819 -0.451
10 C11 C C8 N N N 0 6.133 -0.147 0.933
11 C12 C C9 N N N 0 -5.288 -0.235 -0.089
12 F2 F F1 N N N 0 -5.836 0.7 -0.973
13 F F F2 N N N 0 -5.823 -0.04 1.189
14 F1 F F3 N N N 0 -5.593 -1.528 -0.53
15 C2 C C10 N Y N 0 -3.792 -0.062 -0.039
16 C1 C C11 N Y N 0 -2.98 -1.153 0.217
17 C3 C C12 N Y N 0 -3.236 1.188 -0.238
18 C C C13 N Y N 0 -1.609 -1.0 0.263
19 O O O1 N Y N 0 2.281 1.344 0.037
20 N N N3 N Y N 0 1.343 -0.542 0.346
21 O1 O O2 N N N 0 6.88 -0.1 -1.387
22 H1 H H1 N N N 0 -1.433 2.329 -0.35
23 H2 H H2 N N N 0 3.748 -1.561 0.986
24 H3 H H3 N N N 0 4.619 1.26 1.005
25 H5 H H5 N N N 0 4.286 -1.684 -1.36
26 H6 H H6 N N N 0 4.4 0.101 -1.511
27 H7 H H7 N N N 0 6.407 -1.855 -0.384
28 H8 H H8 N N N 0 6.8 0.714 0.9
29 H9 H H9 N N N 0 6.481 -0.861 1.679
30 H10 H H10 N N N 0 -3.42 -2.125 0.38
31 H11 H H11 N N N 0 -3.874 2.038 -0.429
32 H12 H H12 N N N 0 -0.976 -1.853 0.459
33 H13 H H13 N N N 0 7.824 -0.103 -1.177