Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : D60

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 50


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N N N 0 -8.409 3.156 -0.361
2 N1 N N1 N Y N 0 -7.154 2.518 0.043
3 C8 C C2 N Y N 0 -6.59 1.444 -0.543
4 N2 N N2 N Y N 0 -6.331 2.923 1.101
5 C9 C C3 N Y N 0 -5.304 2.118 1.161
6 C1 C C4 N Y N 0 -5.435 1.165 0.131
7 C2 C C5 N Y N 0 -4.491 0.061 -0.167
8 C6 C C6 N Y N 0 -3.343 -0.103 0.609
9 C7 C C7 N Y N 0 -4.754 -0.816 -1.221
10 C5 C C8 N Y N 0 -3.888 -1.834 -1.498
11 C3 C C9 N Y N 0 -2.733 -2.002 -0.728
12 C11 C C10 N N N 0 -1.798 -3.102 -1.03
13 O2 O O1 N N N 0 -2.11 -4.012 -1.973
14 O1 O O2 N N N 0 -0.746 -3.188 -0.427
15 C4 C C11 N Y N 0 -2.468 -1.129 0.331
16 C12 C C12 N N N 0 -1.227 -1.31 1.168
17 C13 C C13 N N N 0 -0.032 -0.68 0.45
18 C14 C C14 N N N 0 1.208 -0.861 1.286
19 O3 O O3 N N N 0 1.143 -1.438 2.352
20 C15 C C15 N Y N 0 2.494 -0.341 0.813
21 C19 C C16 N Y N 0 3.651 -0.509 1.59
22 F1 F F1 N N N 0 3.581 -1.151 2.777
23 C20 C C17 N Y N 0 4.857 -0.018 1.141
24 C16 C C18 N Y N 0 2.573 0.322 -0.422
25 F2 F F2 N N N 0 1.464 0.482 -1.177
26 C17 C C19 N Y N 0 3.784 0.81 -0.863
27 C18 C C20 N Y N 0 4.93 0.646 -0.084
28 C21 C C21 N Y N 0 6.23 1.172 -0.563
29 C22 C C22 N Y N 0 7.428 1.081 0.088
30 N3 N N3 N Y N 0 8.356 1.682 -0.681
31 N4 N N4 N Y N 0 7.727 2.16 -1.836
32 C23 C C23 N Y N 0 6.458 1.854 -1.775
33 H1 H H1 N N N 0 -9.24 2.695 0.173
34 H2 H H2 N N N 0 -8.369 4.219 -0.124
35 H3 H H3 N N N 0 -8.552 3.029 -1.434
36 H4 H H4 N N N 0 -6.981 0.901 -1.391
37 H5 H H5 N N N 0 -4.494 2.175 1.873
38 H6 H H6 N N N 0 -3.142 0.573 1.426
39 H7 H H7 N N N 0 -5.645 -0.689 -1.817
40 H8 H H8 N N N 0 -4.095 -2.511 -2.314
41 H9 H H9 N N N 0 -1.465 -4.715 -2.135
42 H10 H H10 N N N 0 -1.367 -0.827 2.134
43 H11 H H11 N N N 0 -1.042 -2.374 1.316
44 H12 H H12 N N N 0 0.108 -1.163 -0.517
45 H13 H H13 N N N 0 -0.217 0.384 0.301
46 H14 H H14 N N N 0 5.748 -0.146 1.739
47 H15 H H15 N N N 0 3.846 1.32 -1.813
48 H16 H H16 N N N 0 7.6 0.611 1.045
49 H17 H H17 N N N 0 9.299 1.769 -0.47
50 H18 H H18 N N N 0 5.713 2.086 -2.522