Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : D3K

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 48


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C14 C C1 N Y N 0 -1.586 -0.127 -2.251
2 C10 C C2 N Y N 0 -0.959 -1.541 1.721
3 C13 C C3 N Y N 0 -1.784 -0.16 -0.883
4 C11 C C4 N Y N 0 -0.153 -0.881 0.813
5 C12 C C5 R N N 0 -0.691 0.3 0.047
6 C01 C C6 N N N 0 4.839 1.91 -1.891
7 C03 C C7 N N N 0 4.013 -0.304 -1.485
8 C04 C C8 N N N 0 3.276 -1.152 -0.446
9 C06 C C9 N Y N 0 1.151 -1.306 0.607
10 C07 C C10 N Y N 0 1.643 -2.394 1.314
11 C08 C C11 N Y N 0 0.834 -3.05 2.221
12 C09 C C12 N Y N 0 -0.466 -2.624 2.425
13 C15 C C13 N Y N 0 -2.591 -0.544 -3.105
14 C16 C C14 N Y N 0 -3.793 -0.992 -2.59
15 C17 C C15 N Y N 0 -3.991 -1.024 -1.223
16 C18 C C16 N Y N 0 -2.984 -0.613 -0.369
17 C19 C C17 R N N 0 -1.256 1.33 1.027
18 C21 C C18 N N N 0 -1.459 3.718 1.092
19 C22 C C19 N N N 0 -0.711 3.254 2.361
20 C23 C C20 N N N 0 -0.131 1.878 1.941
21 N20 N N1 N N N 0 -1.76 2.513 0.298
22 O02 O O1 N N N 0 4.16 1.03 -0.993
23 O05 O O2 N N N 0 1.945 -0.659 -0.286
24 H1 H H1 N N N 0 -0.649 0.228 -2.653
25 H2 H H2 N N N 0 -1.973 -1.207 1.885
26 H3 H H3 N N N 0 0.113 0.754 -0.533
27 H4 H H4 N N N 0 4.91 2.901 -1.445
28 H5 H H5 N N N 0 5.84 1.527 -2.088
29 H6 H H6 N N N 0 4.284 1.972 -2.828
30 H7 H H7 N N N 0 4.997 -0.732 -1.673
31 H8 H H8 N N N 0 3.441 -0.287 -2.413
32 H9 H H9 N N N 0 3.242 -2.188 -0.782
33 H10 H H10 N N N 0 3.802 -1.096 0.507
34 H11 H H11 N N N 0 2.658 -2.727 1.156
35 H12 H H12 N N N 0 1.216 -3.897 2.772
36 H13 H H13 N N N 0 -1.097 -3.138 3.134
37 H14 H H14 N N N 0 -2.437 -0.518 -4.173
38 H15 H H15 N N N 0 -4.58 -1.313 -3.257
39 H16 H H16 N N N 0 -4.93 -1.375 -0.821
40 H17 H H17 N N N 0 -3.138 -0.638 0.7
41 H18 H H18 N N N 0 -2.051 0.886 1.626
42 H19 H H19 N N N 0 -2.385 4.22 1.371
43 H20 H H20 N N N 0 -0.828 4.396 0.517
44 H21 H H21 N N N 0 0.09 3.95 2.612
45 H22 H H22 N N N 0 -1.402 3.146 3.197
46 H23 H H23 N N N 0 0.015 1.235 2.809
47 H24 H H24 N N N 0 0.799 1.999 1.385
48 H25 H H25 N N N 0 -1.349 2.573 -0.621