Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : CO8

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 107


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1A N AN1 N Y N 0 2.448 -4.778 -12.276
2 C2A C AC2 N Y N 0 3.215 -3.718 -12.099
3 N3A N AN3 N Y N 0 2.921 -2.77 -11.234
4 C4A C AC4 N Y N 0 1.817 -2.844 -10.497
5 C5A C AC5 N Y N 0 0.971 -3.956 -10.645
6 C6A C AC6 N Y N 0 1.327 -4.942 -11.581
7 N6A N AN6 N N N 0 0.53 -6.056 -11.774
8 N7A N AN7 N Y N 0 -0.061 -3.788 -9.785
9 C8A C AC8 N Y N 0 0.095 -2.674 -9.131
10 N9A N AN9 N Y N 0 1.242 -2.056 -9.532
11 C1B C AC1* R N N 0 1.761 -0.782 -9.03
12 C2B C AC2* R N N 0 1.131 0.408 -9.797
13 O2B O AO2* N N N 0 1.864 0.691 -10.99
14 C3B C AC3* S N N 0 1.273 1.565 -8.773
15 O3B O AO3* N N N 0 2.425 2.356 -9.069
16 P3B P AP3* N N N 0 1.907 3.861 -9.311
17 C4B C AC4* R N N 0 1.435 0.848 -7.419
18 O7A O AO7 N N N 0 1.232 4.353 -8.088
19 O8A O AO8 N N N 0 3.161 4.812 -9.651
20 O9A O AO9 N N N 0 0.869 3.881 -10.541
21 O4B O AO4* N N N 0 1.342 -0.564 -7.666
22 C5B C AC5* N N N 0 0.322 1.283 -6.463
23 O5B O AO5* N N N 0 0.477 0.609 -5.213
24 P1A P AP1 R N N 0 -0.719 1.111 -4.262
25 O1A O AO1 N N N 0 -0.625 2.577 -4.082
26 O2A O AO2 N N N 0 -2.133 0.744 -4.938
27 O3A O AO3 N N N 0 -0.606 0.387 -2.828
28 P2A P AP2 S N N 0 -1.827 0.933 -1.933
29 O4A O AO4 N N N 0 -1.716 2.402 -1.789
30 O5A O AO5 N N N 0 -3.223 0.569 -2.649
31 O6A O AO6 N N N 0 -1.775 0.246 -0.478
32 CBP C PC11 N N N 0 -2.887 0.153 1.665
33 CCP C PC12 N N N 0 -2.878 0.769 0.265
34 CDP C PC13 N N N 0 -1.58 0.498 2.382
35 CEP C PC14 N N N 0 -3.022 -1.366 1.554
36 CAP C PC10 R N N 0 -4.068 0.713 2.461
37 OAP O PO10 N N N 0 -5.279 0.492 1.735
38 C9P C PC9 N N N 0 -4.149 0.018 3.796
39 O9P O PO9 N N N 0 -5.015 -0.807 3.998
40 N8P N PN8 N N N 0 -3.26 0.313 4.764
41 C7P C PC7 N N N 0 -3.326 -0.376 6.055
42 C6P C PC6 N N N 0 -2.212 0.14 6.968
43 C5P C PC5 N N N 0 -2.281 -0.569 8.295
44 O5P O PO5 N N N 0 -3.136 -1.406 8.492
45 N4P N PN4 N N N 0 -1.392 -0.274 9.264
46 C3P C PC3 N N N 0 -1.458 -0.964 10.554
47 C2P C PC2 N N N 0 -0.344 -0.447 11.467
48 S1P S PS1 N N N 0 -0.427 -1.299 13.062
49 C1' C C1* N N N 0 0.888 -0.554 13.865
50 O1' O O1* N N N 0 1.545 0.292 13.297
51 C2' C C2* N N N 0 1.23 -0.951 15.278
52 C3' C C3* N N N 0 2.436 -0.141 15.757
53 C4' C C4* N N N 0 2.784 -0.544 17.192
54 C5' C C5* N N N 0 3.99 0.265 17.671
55 C6' C C6* N N N 0 4.337 -0.136 19.106
56 C7' C C7* N N N 0 5.544 0.672 19.585
57 C8' C C8* N N N 0 5.891 0.27 21.02
58 H2A H AH2 N N N 0 4.117 -3.625 -12.685
59 H61A H AH61 N N N 0 0.787 -6.73 -12.423
60 H62A H AH62 N N N 0 -0.285 -6.164 -11.26
61 H8A H AH8 N N N 0 -0.582 -2.295 -8.381
62 H1B H AH1* N N N 0 2.848 -0.755 -9.107
63 H2B H AH2* N N N 0 0.083 0.213 -10.023
64 HO2A H AHO2 N N N 0 1.813 -0.099 -11.544
65 H3B H AH3* N N N 0 0.376 2.185 -8.772
66 HOA8 H 8HOA N N N 0 2.807 5.702 -9.788
67 HOA9 H 9HOA N N N 0 1.347 3.554 -11.316
68 H52A H AH52 N N N 0 0.381 2.36 -6.304
69 H4B H AH4* N N N 0 2.408 1.086 -6.988
70 H51A H AH51 N N N 0 -0.645 1.032 -6.895
71 HOA2 H 2HOA N N N 0 -2.154 -0.217 -5.037
72 HOA5 H 5HOA N N N 0 -3.255 -0.394 -2.723
73 H121 H 1H12 N N N 0 -3.809 0.523 -0.245
74 H122 H 2H12 N N N 0 -2.783 1.852 0.344
75 H131 H 1H13 N N N 0 -1.546 1.57 2.579
76 H132 H 2H13 N N N 0 -1.528 -0.045 3.325
77 H133 H 3H13 N N N 0 -0.736 0.217 1.753
78 H141 H 1H14 N N N 0 -3.953 -1.611 1.043
79 H142 H 2H14 N N N 0 -2.18 -1.764 0.987
80 H143 H 3H14 N N N 0 -3.028 -1.804 2.551
81 H10 H H10 N N N 0 -3.927 1.783 2.616
82 HO1 H HO1 N N N 0 -5.365 -0.463 1.619
83 HN8 H HN8 N N N 0 -2.576 0.982 4.607
84 H62 H 2H6 N N N 0 -1.245 -0.049 6.503
85 H71 H 1H7 N N N 0 -3.202 -1.448 5.901
86 H72 H 2H7 N N N 0 -4.294 -0.186 6.519
87 H61 H 1H6 N N N 0 -2.337 1.212 7.122
88 HN4 H HN4 N N N 0 -0.707 0.395 9.106
89 H31 H 1H3 N N N 0 -1.334 -2.036 10.4
90 H32 H 2H3 N N N 0 -2.426 -0.774 11.019
91 H21 H 1H2 N N N 0 -0.469 0.624 11.621
92 H22 H 2H2 N N N 0 0.622 -0.637 11.003
93 H2'1 H 1H2* N N N 0 1.47 -2.014 15.31
94 H2'2 H 2H2* N N N 0 0.377 -0.752 15.928
95 H3'1 H 1H3* N N N 0 2.196 0.921 15.726
96 H3'2 H 2H3* N N N 0 3.289 -0.34 15.108
97 H4'1 H 1H4* N N N 0 3.024 -1.606 17.223
98 H4'2 H 2H4* N N N 0 1.931 -0.344 17.842
99 H5'1 H 1H5* N N N 0 3.75 1.328 17.64
100 H5'2 H 2H5* N N N 0 4.842 0.066 17.022
101 H6'1 H 1H6* N N N 0 4.577 -1.199 19.137
102 H6'2 H 2H6* N N N 0 3.485 0.062 19.756
103 H7'1 H 1H7* N N N 0 5.304 1.735 19.554
104 H7'2 H 2H7* N N N 0 6.396 0.473 18.936
105 H8'1 H 1H8* N N N 0 6.75 0.847 21.361
106 H8'2 H 2H8* N N N 0 5.039 0.469 21.669
107 H8'3 H 3H8* N N N 0 6.131 -0.792 21.051