Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : CMP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 34


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P P P R N N 0 0.035 0.457 -4.129
2 O1P O O1P N N N 0 1.127 1.448 -4.01
3 O2P O O2P N N N 0 -0.773 0.723 -5.496
4 O5' O O5* N N N 0 0.664 -1.02 -4.167
5 C5' C C5* N N N 0 1.291 -1.282 -2.903
6 C4' C C4* R N N 0 0.229 -1.157 -1.826
7 O4' O O4* N N N 0 0.656 -1.453 -0.497
8 C3' C C3* S N N 0 -0.193 0.332 -1.731
9 O3' O O3* N N N 0 -0.97 0.624 -2.876
10 C2' C C2* R N N 0 -0.954 0.34 -0.394
11 O2' O O2* N N N 0 -2.353 0.144 -0.61
12 C1' C C1* R N N 0 -0.331 -0.851 0.372
13 N9 N N9 N Y N 0 0.309 -0.374 1.6
14 C8 C C8 N Y N 0 1.602 0.035 1.728
15 N7 N N7 N Y N 0 1.836 0.393 2.958
16 C5 C C5 N Y N 0 0.708 0.241 3.693
17 C6 C C6 N Y N 0 0.372 0.452 5.041
18 N6 N N6 N N N 0 1.309 0.938 5.937
19 N1 N N1 N Y N 0 -0.867 0.18 5.434
20 C2 C C2 N Y N 0 -1.767 -0.282 4.587
21 N3 N N3 N Y N 0 -1.496 -0.501 3.317
22 C4 C C4 N Y N 0 -0.282 -0.258 2.833
23 HOP2 H 2HOP N N N 0 -0.136 0.638 -6.218
24 H5'1 H 1H5* N N N 0 2.083 -0.554 -2.726
25 H5'2 H 2H5* N N N 0 1.706 -2.29 -2.899
26 H4' H H4* N N N 0 -0.632 -1.772 -2.084
27 H3' H H3* N N N 0 0.687 0.973 -1.69
28 H2' H H2* N N N 0 -0.776 1.272 0.143
29 HO2' H *HO2 N N N 0 -2.775 0.159 0.259
30 H1' H H1* N N N 0 -1.104 -1.58 0.616
31 H8 H H8 N N N 0 2.327 0.059 0.928
32 HN61 H 1HN6 N N N 0 1.063 1.083 6.864
33 HN62 H 2HN6 N N N 0 2.212 1.129 5.639
34 H2 H H2 N N N 0 -2.763 -0.49 4.948