Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : AGL

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 24


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 S N N 0 1.449 -0.221 -0.706
2 C2 C C2 R N N 0 0.098 -0.522 -1.36
3 C3 C C3 S N N 0 -1.006 0.189 -0.572
4 C4 C C4 S N N 0 -0.892 -0.211 0.902
5 C5 C C5 R N N 0 0.532 0.066 1.386
6 C6 C C6 N N N 0 0.647 -0.297 2.867
7 O1 O O1 N N Y 0 1.666 1.19 -0.693
8 O2 O O2 N N N 0 0.105 -0.051 -2.709
9 O3 O O3 N N N 0 -2.284 -0.199 -1.08
10 N4 N N4 N N N 0 -1.843 0.573 1.7
11 O5 O O5 N N N 0 1.458 -0.714 0.632
12 H1 H H1 N N N 0 2.243 -0.705 -1.275
13 H2 H H2 N N N 0 -0.08 -1.597 -1.349
14 H3 H H3 N N N 0 -0.888 1.268 -0.669
15 H4 H H4 N N N 0 -1.114 -1.273 1.01
16 H5 H H5 N N N 0 0.76 1.124 1.254
17 H61 H H61 N N N 0 1.662 -0.097 3.213
18 H62 H H62 N N N 0 -0.057 0.3 3.444
19 H63 H H63 N N N 0 0.42 -1.355 3.0
20 HO1 H HO1 N N Y 0 2.527 1.337 -0.279
21 HO2 H HO2 N N Y 0 0.818 -0.519 -3.165
22 HO3 H HO3 N N Y 0 -2.305 0.06 -2.011
23 HN41 H HN41 N N N 0 -1.732 0.276 2.658
24 HN42 H HN42 N N N 0 -1.536 1.533 1.657