Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : A3P

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 42


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P1 P P1 N N N 0 3.047 -0.319 -2.419
2 O1P O O1P N N N 0 2.08 -0.681 -3.479
3 O2P O O2P N N N 0 4.314 0.422 -3.08
4 O3P O O3P N N Y 0 3.54 -1.653 -1.664
5 P2 P P2 N N N 0 -2.728 0.073 -3.807
6 O4P O O4P N N N 0 -2.932 -1.369 -3.549
7 O5P O O5P N N N 0 -4.149 0.773 -4.096
8 O6P O O6P N N N 0 -1.768 0.259 -5.086
9 O5' O O5* N N N 0 -2.045 0.758 -2.52
10 C5' C C5* N N N 0 -0.794 0.097 -2.316
11 C4' C C4* R N N 0 -0.09 0.703 -1.1
12 O4' O O4* N N N 0 -0.888 0.516 0.088
13 C3' C C3* S N N 0 1.229 -0.045 -0.812
14 O3' O O3* N N N 0 2.34 0.666 -1.361
15 C2' C C2* R N N 0 1.314 -0.077 0.732
16 O2' O O2* N N N 0 2.481 0.612 1.183
17 C1' C C1* R N N 0 0.033 0.654 1.191
18 N9 N N9 N Y N 0 -0.512 0.021 2.394
19 C8 C C8 N Y N 0 -1.396 -1.015 2.429
20 N7 N N7 N Y N 0 -1.667 -1.326 3.663
21 C5 C C5 N Y N 0 -0.972 -0.515 4.496
22 C6 C C6 N Y N 0 -0.873 -0.382 5.891
23 N6 N N6 N N N 0 -1.588 -1.215 6.734
24 N1 N N1 N Y N 0 -0.072 0.558 6.383
25 C2 C C2 N Y N 0 0.612 1.357 5.586
26 N3 N N3 N Y N 0 0.547 1.273 4.274
27 C4 C C4 N Y N 0 -0.226 0.362 3.691
28 HOP2 H 2HOP N N N 0 4.708 -0.2 -3.705
29 HOP3 H 3HOP N N N 0 4.167 -1.373 -0.983
30 HOP5 H 5HOP N N N 0 -4.523 0.335 -4.873
31 HOP6 H 6HOP N N N 0 -1.661 1.211 -5.22
32 H5'1 H 1H5* N N N 0 -0.168 0.223 -3.199
33 H5'2 H 2H5* N N N 0 -0.968 -0.964 -2.143
34 H4' H H4* N N N 0 0.103 1.763 -1.265
35 H3' H H3* N N N 0 1.189 -1.058 -1.214
36 H2' H H2* N N N 0 1.315 -1.105 1.093
37 HO2' H *HO2 N N N 0 2.481 0.56 2.149
38 H1' H H1* N N N 0 0.244 1.707 1.379
39 H8 H H8 N N N 0 -1.811 -1.505 1.561
40 HN61 H 1HN6 N N N 0 -1.508 -1.116 7.696
41 HN62 H 2HN6 N N N 0 -2.171 -1.895 6.364
42 H2 H H2 N N N 0 1.251 2.108 6.027