data_A3P
#
_chem_comp.id A3P
_chem_comp.name "ADENOSINE-3'-5'-DIPHOSPHATE"
_chem_comp.type 'RNA LINKING'
_chem_comp.pdbx_type ATOMN
_chem_comp.formula 'C10 H15 N5 O10 P2'
_chem_comp.mon_nstd_parent_comp_id A
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 427.201
_chem_comp.one_letter_code A
_chem_comp.three_letter_code A3P
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1AQU
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A3P P1 P1 P 0 1 N N N N N N 4.090 23.888 22.033 3.047 -0.319 -2.419 P1 A3P 1
A3P O1P O1P O 0 1 N N N N N N 4.339 24.834 23.134 2.080 -0.681 -3.479 O1P A3P 2
A3P O2P O2P O 0 1 N N N N N N 2.805 23.167 22.209 4.314 0.422 -3.080 O2P A3P 3
A3P O3P O3P O 0 1 N Y N N N N 4.134 24.595 20.729 3.540 -1.653 -1.664 O3P A3P 4
A3P P2 P2 P 0 1 N N N N N N 10.492 20.644 24.788 -2.728 0.073 -3.807 P2 A3P 5
A3P O4P O4P O 0 1 N N N N N N 10.264 19.264 25.205 -2.932 -1.369 -3.549 O4P A3P 6
A3P O5P O5P O 0 1 N N N N N N 11.781 20.754 24.048 -4.149 0.773 -4.096 O5P A3P 7
A3P O6P O6P O 0 1 N N N N N N 10.471 21.568 25.947 -1.768 0.259 -5.086 O6P A3P 8
A3P "O5'" O5* O 0 1 N N N N N N 9.298 21.064 23.779 -2.045 0.758 -2.520 "O5'" A3P 9
A3P "C5'" C5* C 0 1 N N N N N N 7.941 21.288 24.183 -0.794 0.097 -2.316 "C5'" A3P 10
A3P "C4'" C4* C 0 1 N N R N N N 7.078 21.449 22.912 -0.090 0.703 -1.100 "C4'" A3P 11
A3P "O4'" O4* O 0 1 N N N N N N 6.948 20.124 22.293 -0.888 0.516 0.088 "O4'" A3P 12
A3P "C3'" C3* C 0 1 N N S N N N 5.639 21.942 23.164 1.229 -0.045 -0.812 "C3'" A3P 13
A3P "O3'" O3* O 0 1 N N N N N N 5.251 22.785 22.043 2.340 0.666 -1.361 "O3'" A3P 14
A3P "C2'" C2* C 0 1 N N R N N N 4.889 20.606 23.288 1.314 -0.077 0.732 "C2'" A3P 15
A3P "O2'" O2* O 0 1 N N N N N N 3.481 20.642 23.168 2.481 0.612 1.183 "O2'" A3P 16
A3P "C1'" C1* C 0 1 N N R N N N 5.564 19.791 22.177 0.033 0.654 1.191 "C1'" A3P 17
A3P N9 N9 N 0 1 Y N N N N N 5.352 18.337 22.289 -0.512 0.021 2.394 N9 A3P 18
A3P C8 C8 C 0 1 Y N N N N N 5.639 17.490 23.342 -1.396 -1.015 2.429 C8 A3P 19
A3P N7 N7 N 0 1 Y N N N N N 5.325 16.226 23.132 -1.667 -1.326 3.663 N7 A3P 20
A3P C5 C5 C 0 1 Y N N N N N 4.791 16.227 21.850 -0.972 -0.515 4.496 C5 A3P 21
A3P C6 C6 C 0 1 Y N N N N N 4.257 15.187 21.019 -0.873 -0.382 5.891 C6 A3P 22
A3P N6 N6 N 0 1 N N N N N N 4.182 13.908 21.396 -1.588 -1.215 6.734 N6 A3P 23
A3P N1 N1 N 0 1 Y N N N N N 3.801 15.535 19.768 -0.072 0.558 6.383 N1 A3P 24
A3P C2 C2 C 0 1 Y N N N N N 3.870 16.831 19.368 0.612 1.357 5.586 C2 A3P 25
A3P N3 N3 N 0 1 Y N N N N N 4.350 17.901 20.061 0.547 1.273 4.274 N3 A3P 26
A3P C4 C4 C 0 1 Y N N N N N 4.798 17.526 21.301 -0.226 0.362 3.691 C4 A3P 27
A3P HOP2 2HOP H 0 0 N N N N N N 2.644 22.556 21.498 4.708 -0.200 -3.705 HOP2 A3P 28
A3P HOP3 3HOP H 0 0 N N N N N N 3.973 23.984 20.018 4.167 -1.373 -0.983 HOP3 A3P 29
A3P HOP5 5HOP H 0 0 N N N N N N 11.929 21.652 23.776 -4.523 0.335 -4.873 HOP5 A3P 30
A3P HOP6 6HOP H 0 0 N N N N N N 10.619 22.466 25.675 -1.661 1.211 -5.220 HOP6 A3P 31
A3P "H5'1" 1H5* H 0 0 N N N N N N 7.558 20.492 24.863 -0.168 0.223 -3.199 "H5'1" A3P 32
A3P "H5'2" 2H5* H 0 0 N N N N N N 7.838 22.148 24.884 -0.968 -0.964 -2.143 "H5'2" A3P 33
A3P "H4'" H4* H 0 1 N N N N N N 7.593 22.212 22.284 0.103 1.763 -1.265 "H4'" A3P 34
A3P "H3'" H3* H 0 1 N N N N N N 5.451 22.581 24.058 1.189 -1.058 -1.214 "H3'" A3P 35
A3P "H2'" H2* H 0 1 N N N N N N 4.967 20.185 24.317 1.315 -1.105 1.093 "H2'" A3P 36
A3P "HO2'" *HO2 H 0 0 N N N N N N 3.017 19.816 23.244 2.481 0.560 2.149 "HO2'" A3P 37
A3P "H1'" H1* H 0 1 N N N N N N 5.128 20.042 21.181 0.244 1.707 1.379 "H1'" A3P 38
A3P H8 H8 H 0 1 N N N N N N 6.093 17.805 24.296 -1.811 -1.505 1.561 H8 A3P 39
A3P HN61 1HN6 H 0 0 N N N N N N 3.802 13.168 20.805 -1.508 -1.116 7.696 HN61 A3P 40
A3P HN62 2HN6 H 0 0 N N N N N N 3.670 13.882 22.278 -2.171 -1.895 6.364 HN62 A3P 41
A3P H2 H2 H 0 1 N N N N N N 3.488 17.040 18.354 1.251 2.108 6.027 H2 A3P 42
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A3P P1 O1P DOUB N N 1
A3P P1 O2P SING N N 2
A3P P1 O3P SING N N 3
A3P P1 "O3'" SING N N 4
A3P O2P HOP2 SING N N 5
A3P O3P HOP3 SING N N 6
A3P P2 O4P DOUB N N 7
A3P P2 O5P SING N N 8
A3P P2 O6P SING N N 9
A3P P2 "O5'" SING N N 10
A3P O5P HOP5 SING N N 11
A3P O6P HOP6 SING N N 12
A3P "O5'" "C5'" SING N N 13
A3P "C5'" "C4'" SING N N 14
A3P "C5'" "H5'1" SING N N 15
A3P "C5'" "H5'2" SING N N 16
A3P "C4'" "O4'" SING N N 17
A3P "C4'" "C3'" SING N N 18
A3P "C4'" "H4'" SING N N 19
A3P "O4'" "C1'" SING N N 20
A3P "C3'" "O3'" SING N N 21
A3P "C3'" "C2'" SING N N 22
A3P "C3'" "H3'" SING N N 23
A3P "C2'" "O2'" SING N N 24
A3P "C2'" "C1'" SING N N 25
A3P "C2'" "H2'" SING N N 26
A3P "O2'" "HO2'" SING N N 27
A3P "C1'" N9 SING N N 28
A3P "C1'" "H1'" SING N N 29
A3P N9 C8 SING Y N 30
A3P N9 C4 SING Y N 31
A3P C8 N7 DOUB Y N 32
A3P C8 H8 SING N N 33
A3P N7 C5 SING Y N 34
A3P C5 C6 SING Y N 35
A3P C5 C4 DOUB Y N 36
A3P C6 N6 SING N N 37
A3P C6 N1 DOUB Y N 38
A3P N6 HN61 SING N N 39
A3P N6 HN62 SING N N 40
A3P N1 C2 SING Y N 41
A3P C2 N3 DOUB Y N 42
A3P C2 H2 SING N N 43
A3P N3 C4 SING Y N 44
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A3P SMILES ACDLabs 10.04 'O=P(O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3OP(=O)(O)O'
A3P SMILES_CANONICAL CACTVS 3.341 'Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O[P](O)(O)=O)[C@H]3O'
A3P SMILES CACTVS 3.341 'Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH]3O'
A3P SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 'c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)OP(=O)(O)O)O)N'
A3P SMILES 'OpenEye OEToolkits' 1.5.0 'c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)OP(=O)(O)O)O)N'
A3P InChI InChI 1.03 'InChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-6(16)7(25-27(20,21)22)4(24-10)1-23-26(17,18)19/h2-4,6-7,10,16H,1H2,(H2,11,12,13)(H2,17,18,19)(H2,20,21,22)/t4-,6-,7-,10-/m1/s1'
A3P InChIKey InChI 1.03 WHTCPDAXWFLDIH-KQYNXXCUSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A3P 'SYSTEMATIC NAME' ACDLabs 10.04
;adenosine 3',5'-bis(dihydrogen phosphate)
;
A3P 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.5.0 '[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-2-(phosphonooxymethyl)oxolan-3-yl] dihydrogen phosphate'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A3P 'Create component' 1999-07-08 RCSB
A3P 'Modify descriptor' 2011-06-04 RCSB
A3P 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id A3P
_pdbx_chem_comp_pcm.modified_residue_id TYR
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom P1
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom OH
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
_pdbe_chem_comp_drugbank_details.comp_id A3P
_pdbe_chem_comp_drugbank_details.drugbank_id DB01812
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name "Adenosine 3',5'-diphosphate"
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 1053-73-2
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
A3P "3'-Phosphoadenosine 5'-phosphate" DrugBank ?
A3P "3',5'-ADP" DrugBank ?
A3P "Adenosine 3'-phosphate-5'-phosphate" DrugBank ?
A3P "Adenosine 3',5'-bismonophosphate" DrugBank ?
A3P "Adenosine 3',5'-diphosphate" DrugBank ?
A3P 'Phosphoadenosine phosphate' DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id A3P
_pdbe_chem_comp_drugbank_classification.drugbank_id DB01812
_pdbe_chem_comp_drugbank_classification.parent "Purine ribonucleoside 3',5'-bisphosphates"
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Purine nucleotides'
_pdbe_chem_comp_drugbank_classification.superclass 'Nucleosides, nucleotides, and analogues'
_pdbe_chem_comp_drugbank_classification.description
"This compound belongs to the class of organic compounds known as purine ribonucleoside 3',5'-bisphosphates. These are purine ribobucleotides with one phosphate group attached to 3' and 5' hydroxyl groups of the ribose moiety."
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
A3P DB01812 'Heparan sulfate glucosamine 3-O-sulfotransferase 1' Humans O14792 unknown 1
A3P DB01812 'Sulfotransferase 2B1' Humans O00204 unknown 2
A3P DB01812 'Non-secretory ribonuclease' Humans P10153 unknown 3
A3P DB01812 'Sulfotransferase 1A1' Humans P50225 unknown 4
A3P DB01812 'Heparan sulfate glucosamine 3-O-sulfotransferase 3A1' Humans Q9Y663 unknown 5
A3P DB01812 'Ribonuclease pancreatic' Humans P07998 unknown 6
A3P DB01812 'Sulfotransferase 2A1' Humans Q06520 unknown 7
A3P DB01812 'Sulfotransferase 1E1' Humans P49888 unknown 8
A3P DB01812 'DNA topoisomerase 1' 'Escherichia coli (strain K12)' P06612 unknown 9
A3P DB01812 'Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1' Humans P52848 unknown 10
A3P DB01812 'Holo-[acyl-carrier-protein] synthase' 'Streptococcus pneumoniae (strain ATCC BAA-255 / R6)' P0A2W7 unknown 11
A3P DB01812 'Sulfotransferase 1B1' Humans O43704 unknown 12
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
A3P P1 P 9.993 3.772 1
A3P O1P O 9.839 5.264 2
A3P O2P O 11.485 3.927 3
A3P O3P O 8.501 3.618 4
A3P P2 P 5.117 5.036 5
A3P O4P O 4.656 6.463 6
A3P O5P O 3.690 4.575 7
A3P O6P O 6.545 5.497 8
A3P "O5'" O 5.579 3.609 9
A3P "C5'" C 7.045 3.294 10
A3P "C4'" C 7.506 1.867 11
A3P "O4'" O 6.622 0.655 12
A3P "C3'" C 8.932 1.401 13
A3P "O3'" O 10.147 2.280 14
A3P "C2'" C 8.929 -0.099 15
A3P "O2'" O 10.141 -0.983 16
A3P "C1'" C 7.502 -0.560 17
A3P N9 N 7.036 -1.986 18
A3P C8 C 7.912 -3.193 19
A3P N7 N 7.036 -4.400 20
A3P C5 C 5.617 -3.943 21
A3P C6 C 4.318 -4.693 22
A3P N6 N 4.318 -6.193 23
A3P N1 N 3.019 -3.943 24
A3P C2 C 3.019 -2.443 25
A3P N3 N 4.318 -1.693 26
A3P C4 C 5.617 -2.443 27
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
A3P P1 O1P DOUBLE NONE 1
A3P P1 O2P SINGLE NONE 2
A3P P1 O3P SINGLE NONE 3
A3P P1 "O3'" SINGLE NONE 4
A3P P2 O4P DOUBLE NONE 5
A3P P2 O5P SINGLE NONE 6
A3P P2 O6P SINGLE NONE 7
A3P P2 "O5'" SINGLE NONE 8
A3P "O5'" "C5'" SINGLE NONE 9
A3P "C4'" "C5'" SINGLE BEGINDASH 10
A3P "C4'" "O4'" SINGLE NONE 11
A3P "C4'" "C3'" SINGLE NONE 12
A3P "O4'" "C1'" SINGLE NONE 13
A3P "C3'" "O3'" SINGLE BEGINWEDGE 14
A3P "C3'" "C2'" SINGLE NONE 15
A3P "C2'" "O2'" SINGLE BEGINWEDGE 16
A3P "C2'" "C1'" SINGLE NONE 17
A3P "C1'" N9 SINGLE BEGINDASH 18
A3P N9 C8 SINGLE NONE 19
A3P N9 C4 SINGLE NONE 20
A3P C8 N7 DOUBLE NONE 21
A3P N7 C5 SINGLE NONE 22
A3P C5 C6 DOUBLE NONE 23
A3P C5 C4 SINGLE NONE 24
A3P C6 N6 SINGLE NONE 25
A3P C6 N1 SINGLE NONE 26
A3P N1 C2 DOUBLE NONE 27
A3P C2 N3 SINGLE NONE 28
A3P N3 C4 DOUBLE NONE 29
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
A3P MurckoScaffold S1 scaffold 'c1ncc2ncn([C@H]3CCCO3)c2n1' InChI=1S/C9H10N4O/c1-2-8(14-3-1)13-6-12-7-4-10-5-11-9(7)13/h4-6,8H,1-3H2/t8-/m1/s1 DAKONNSVCLKUJN-MRVPVSSYSA-N
A3P adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
A3P imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
A3P phosphate F3 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
A3P purine F4 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
A3P pyrimidine F5 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
A3P ribose F6 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
A3P "C4'" S1 1
A3P "O4'" S1 1
A3P "C3'" S1 1
A3P "C2'" S1 1
A3P "C1'" S1 1
A3P N9 S1 1
A3P C8 S1 1
A3P N7 S1 1
A3P C5 S1 1
A3P C6 S1 1
A3P N1 S1 1
A3P C2 S1 1
A3P N3 S1 1
A3P C4 S1 1
A3P N1 F1 1
A3P C6 F1 1
A3P C5 F1 1
A3P C4 F1 1
A3P N3 F1 1
A3P C2 F1 1
A3P N9 F1 1
A3P C8 F1 1
A3P N7 F1 1
A3P N6 F1 1
A3P C5 F2 1
A3P C4 F2 1
A3P N9 F2 1
A3P C8 F2 1
A3P N7 F2 1
A3P O2P F3 1
A3P P1 F3 1
A3P O1P F3 1
A3P O3P F3 1
A3P "O3'" F3 1
A3P O5P F3 2
A3P P2 F3 2
A3P O4P F3 2
A3P O6P F3 2
A3P "O5'" F3 2
A3P N7 F4 1
A3P C8 F4 1
A3P N9 F4 1
A3P C4 F4 1
A3P C5 F4 1
A3P C6 F4 1
A3P N1 F4 1
A3P C2 F4 1
A3P N3 F4 1
A3P C5 F5 1
A3P C6 F5 1
A3P N1 F5 1
A3P C2 F5 1
A3P N3 F5 1
A3P C4 F5 1
A3P "C2'" F6 1
A3P "C3'" F6 1
A3P "C4'" F6 1
A3P "O4'" F6 1
A3P "C1'" F6 1
A3P "C5'" F6 1
A3P "O5'" F6 1
A3P "O3'" F6 1
A3P "O2'" F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id A3P
_pdbe_chem_comp_rdkit_properties.exactmw 427.029
_pdbe_chem_comp_rdkit_properties.amw 427.203
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 15
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 15
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 27
_pdbe_chem_comp_rdkit_properties.NumAtoms 42
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 17
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 171.385
_pdbe_chem_comp_rdkit_properties.tpsa 232.600
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.555
_pdbe_chem_comp_rdkit_properties.CrippenMR 81.535
_pdbe_chem_comp_rdkit_properties.chi0v 14.002
_pdbe_chem_comp_rdkit_properties.chi1v 9.138
_pdbe_chem_comp_rdkit_properties.chi2v 3.392
_pdbe_chem_comp_rdkit_properties.chi3v 3.392
_pdbe_chem_comp_rdkit_properties.chi4v 2.351
_pdbe_chem_comp_rdkit_properties.chi0n 27.213
_pdbe_chem_comp_rdkit_properties.chi1n 13.153
_pdbe_chem_comp_rdkit_properties.chi2n 2.671
_pdbe_chem_comp_rdkit_properties.chi3n 2.671
_pdbe_chem_comp_rdkit_properties.chi4n 1.767
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.510
_pdbe_chem_comp_rdkit_properties.kappa1 8.468
_pdbe_chem_comp_rdkit_properties.kappa2 7.145
_pdbe_chem_comp_rdkit_properties.kappa3 4.496
_pdbe_chem_comp_rdkit_properties.Phi 2.241
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
A3P UniChem ChEMBL CHEMBL574817
A3P UniChem ChEBI CHEBI:17985
A3P UniChem BRENDA 9762
A3P UniChem BRENDA 91251
A3P UniChem BRENDA 7470
A3P UniChem BRENDA 7142
A3P UniChem BRENDA 68
A3P UniChem BRENDA 5901
A3P UniChem BRENDA 5744
A3P UniChem BRENDA 33051
A3P UniChem BRENDA 3063
A3P UniChem BRENDA 190182
A3P UniChem BRENDA 185472
A3P UniChem BRENDA 180534
A3P UniChem BRENDA 178227
A3P UniChem BRENDA 156585
A3P UniChem BRENDA 149128
A3P UniChem BRENDA 125222
A3P UniChem SureChEMBL 29431883
A3P UniChem SureChEMBL 42104
A3P UniChem 'EPA CompTox Dashboard' DTXSID50909413
A3P UniChem fdasrs C65F80D52U
A3P UniChem HMDB HMDB0000061
A3P UniChem PubChem 159296
A3P UniChem 'Probes And Drugs' PD047472
A3P UniChem DrugBank DB01812
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
A3P P1 -1.384 3.539 -0.181 ETKDGv3 1
A3P O1P 0.024 3.815 -0.661 ETKDGv3 2
A3P O2P -2.322 2.970 -1.470 ETKDGv3 3
A3P O3P -2.061 4.976 0.401 ETKDGv3 4
A3P P2 -4.410 -2.301 1.024 ETKDGv3 5
A3P O4P -5.507 -1.259 1.019 ETKDGv3 6
A3P O5P -4.125 -2.834 -0.557 ETKDGv3 7
A3P O6P -4.900 -3.617 1.968 ETKDGv3 8
A3P "O5'" -2.983 -1.644 1.689 ETKDGv3 9
A3P "C5'" -2.542 -0.601 0.853 ETKDGv3 10
A3P "C4'" -1.263 0.004 1.438 ETKDGv3 11
A3P "O4'" -0.244 -0.970 1.483 ETKDGv3 12
A3P "C3'" -0.767 1.189 0.617 ETKDGv3 13
A3P "O3'" -1.367 2.386 1.078 ETKDGv3 14
A3P "C2'" 0.724 1.150 0.880 ETKDGv3 15
A3P "O2'" 1.101 1.989 1.948 ETKDGv3 16
A3P "C1'" 0.983 -0.326 1.210 ETKDGv3 17
A3P N9 1.642 -0.998 0.090 ETKDGv3 18
A3P C8 1.031 -1.368 -1.166 ETKDGv3 19
A3P N7 1.862 -1.518 -2.164 ETKDGv3 20
A3P C5 3.146 -1.233 -1.626 ETKDGv3 21
A3P C6 4.320 -1.090 -2.239 ETKDGv3 22
A3P N6 4.481 -1.346 -3.634 ETKDGv3 23
A3P N1 5.433 -0.626 -1.440 ETKDGv3 24
A3P C2 5.280 -0.314 -0.174 ETKDGv3 25
A3P N3 3.983 -0.425 0.458 ETKDGv3 26
A3P C4 3.009 -0.901 -0.256 ETKDGv3 27
A3P HOP2 -2.331 3.714 -2.124 ETKDGv3 28
A3P HOP3 -1.522 5.204 1.200 ETKDGv3 29
A3P HOP5 -4.976 -3.255 -0.839 ETKDGv3 30
A3P HOP6 -4.969 -3.256 2.888 ETKDGv3 31
A3P "H5'1" -3.311 0.203 0.790 ETKDGv3 32
A3P "H5'2" -2.318 -0.985 -0.169 ETKDGv3 33
A3P "H4'" -1.475 0.334 2.481 ETKDGv3 34
A3P "H3'" -0.956 0.981 -0.464 ETKDGv3 35
A3P "H2'" 1.281 1.470 -0.028 ETKDGv3 36
A3P "HO2'" 0.617 1.692 2.762 ETKDGv3 37
A3P "H1'" 1.634 -0.415 2.107 ETKDGv3 38
A3P H8 -0.037 -1.489 -1.286 ETKDGv3 39
A3P HN61 5.412 -1.210 -4.085 ETKDGv3 40
A3P HN62 3.680 -1.674 -4.220 ETKDGv3 41
A3P H2 6.126 0.040 0.399 ETKDGv3 42
#