Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 9UD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 69


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C1 N Y N 0 3.404 -0.159 0.394
2 C5 C C2 N Y N 0 3.267 0.411 1.657
3 C6 C C3 N Y N 0 2.013 0.58 2.212
4 N1 N N1 N Y N 0 6.431 -0.191 -1.614
5 C7 C C4 N Y N 0 0.888 0.182 1.503
6 C8 C C5 N Y N 0 1.022 -0.389 0.241
7 N2 N N2 N N N 0 -0.394 0.349 2.041
8 C9 C C6 N Y N 0 2.272 -0.56 -0.313
9 C10 C C7 N N N 0 2.415 -1.18 -1.679
10 C11 C C8 N N N 0 -0.53 0.664 3.469
11 C12 C C9 N N N 0 0.498 1.751 3.809
12 N3 N N3 N Y N 0 -2.248 -0.872 1.076
13 C13 C C10 N N N 0 1.902 1.191 3.585
14 C14 C C11 N Y N 0 -1.528 0.218 1.23
15 C15 C C12 N N N 0 -4.326 -1.523 -0.259
16 N4 N N4 N Y N 0 -3.291 -0.586 0.184
17 N N N5 N Y N 0 6.837 -0.937 -0.501
18 C C C13 N N N 0 8.161 -1.529 -0.299
19 O O O1 N N N 0 -5.468 -4.132 -0.186
20 C1 C C14 N Y N 0 5.797 -1.015 0.355
21 C16 C C15 N N N 0 -5.114 -2.03 0.952
22 C17 C C16 N N N 0 -6.14 -3.066 0.487
23 C18 C C17 N N N 0 -4.753 -3.725 -1.355
24 C19 C C18 N N N 0 -3.671 -2.715 -0.964
25 C2 C C19 N Y N 0 4.753 -0.335 -0.2
26 C20 C C20 N Y N 0 -3.175 0.7 -0.194
27 C21 C C21 N Y N 0 -2.095 1.222 0.44
28 C22 C C22 N N N 0 -1.637 2.652 0.284
29 C23 C C23 N N N 0 -3.83 2.967 -0.936
30 C24 C C24 N N N 0 -4.057 1.465 -1.148
31 C25 C C25 N N N 0 -1.763 3.979 -1.778
32 C26 C C26 N N N 0 -0.308 4.335 -1.607
33 C3 C C27 N Y N 0 5.188 0.171 -1.441
34 F F F1 N N N 0 3.506 -2.056 -1.682
35 F1 F F2 N N N 0 1.249 -1.885 -1.995
36 N5 N N6 N N N 0 -2.386 3.229 -0.847
37 O1 O O2 N N N 0 -2.372 4.368 -2.751
38 H1 H H1 N N N 0 4.145 0.721 2.205
39 H2 H H2 N N N 0 0.144 -0.699 -0.305
40 H3 H H3 N N N 0 2.577 -0.395 -2.419
41 H4 H H4 N N N 0 -1.536 1.031 3.672
42 H5 H H5 N N N 0 -0.336 -0.228 4.064
43 H6 H H6 N N N 0 0.342 2.616 3.164
44 H7 H H7 N N N 0 0.383 2.048 4.852
45 H8 H H8 N N N 0 2.109 0.429 4.336
46 H9 H H9 N N N 0 2.63 1.997 3.68
47 H10 H H10 N N N 0 -5.003 -1.019 -0.949
48 H11 H H11 N N N 0 8.805 -0.814 0.213
49 H12 H H12 N N N 0 8.068 -2.431 0.305
50 H13 H H13 N N N 0 8.596 -1.783 -1.266
51 H14 H H14 N N N 0 5.792 -1.524 1.308
52 H15 H H15 N N N 0 -4.429 -2.49 1.665
53 H16 H H16 N N N 0 -5.629 -1.195 1.428
54 H17 H H17 N N N 0 -6.849 -2.595 -0.194
55 H18 H H18 N N N 0 -6.674 -3.462 1.351
56 H19 H H19 N N N 0 -4.288 -4.595 -1.818
57 H20 H H20 N N N 0 -5.444 -3.263 -2.061
58 H21 H H21 N N N 0 -3.154 -2.37 -1.859
59 H22 H H22 N N N 0 -2.957 -3.189 -0.29
60 H23 H H23 N N N 0 -1.851 3.212 1.194
61 H24 H H24 N N N 0 -0.568 2.678 0.073
62 H25 H H25 N N N 0 -4.251 3.521 -1.775
63 H26 H H26 N N N 0 -4.316 3.281 -0.012
64 H27 H H27 N N N 0 -3.803 1.199 -2.174
65 H28 H H28 N N N 0 -5.102 1.222 -0.954
66 H29 H H29 N N N 0 0.077 3.866 -0.702
67 H30 H H30 N N N 0 0.256 3.98 -2.47
68 H31 H H31 N N N 0 -0.206 5.417 -1.528
69 H32 H H32 N N N 0 4.596 0.757 -2.129