Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 8YC

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 40


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O1 O O1 N N N 0 0.592 -1.884 -0.467
2 C5 C C1 N N N 0 0.699 -0.786 0.038
3 N1 N N1 N N N 0 1.903 -0.353 0.46
4 C1 C C2 R N N 0 3.164 -1.104 0.37
5 C6 C C3 N N N 0 3.484 -1.377 -1.04
6 N2 N N2 N N N 0 3.731 -1.588 -2.129
7 C3 C C4 N N N 0 4.266 -0.225 0.998
8 C4 C C5 N N N 0 3.465 0.735 1.917
9 C2 C C6 S N N 0 2.176 0.956 1.082
10 C7 C C7 N N N 0 2.4 1.978 0.048
11 N3 N N3 N N N 0 2.574 2.768 -0.751
12 C8 C C8 N N N 0 -0.514 0.096 0.188
13 N4 N N4 N N N 0 -1.693 -0.597 -0.35
14 C9 C C9 N N N 0 -2.915 0.181 -0.112
15 C14 C C10 N N N 0 -2.775 1.577 -0.723
16 O2 O O2 N N N 0 -2.444 1.459 -2.108
17 C10 C C11 N N N 0 -3.184 0.292 1.4
18 C11 C C12 N N N 0 -4.554 -0.369 1.653
19 C12 C C13 N N N 0 -4.734 -1.341 0.461
20 C13 C C14 N N N 0 -4.131 -0.544 -0.724
21 H1 H H1 N N N 0 3.077 -2.04 0.921
22 H2 H H2 N N N 0 4.956 -0.833 1.584
23 H3 H H3 N N N 0 4.799 0.333 0.229
24 H4 H H4 N N N 0 3.239 0.263 2.873
25 H5 H H5 N N N 0 4.0 1.673 2.063
26 H6 H H6 N N N 0 1.349 1.247 1.731
27 H9 H H9 N N N 0 -0.674 0.318 1.243
28 H10 H H10 N N N 0 -0.358 1.025 -0.36
29 H11 H H11 N N N 0 -1.774 -1.526 0.037
30 H13 H H13 N N N 0 -3.717 2.115 -0.618
31 H14 H H14 N N N 0 -1.986 2.122 -0.205
32 H15 H H15 N N N 0 -2.339 2.307 -2.56
33 H16 H H16 N N N 0 -2.407 -0.233 1.956
34 H17 H H17 N N N 0 -3.213 1.34 1.698
35 H18 H H18 N N N 0 -4.544 -0.919 2.595
36 H19 H H19 N N N 0 -5.345 0.381 1.66
37 H20 H H20 N N N 0 -4.179 -2.264 0.627
38 H21 H H21 N N N 0 -5.79 -1.55 0.289
39 H22 H H22 N N N 0 -4.854 0.178 -1.105
40 H23 H H23 N N N 0 -3.814 -1.221 -1.517