Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 8GY

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 52


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C5 C C1 N Y N 0 -4.611 0.43 -0.04
2 C6 C C2 N Y N 0 -4.843 1.793 -0.172
3 C7 C C3 N Y N 0 -3.78 2.677 -0.22
4 C8 C C4 N Y N 0 -2.489 2.208 -0.136
5 C13 C C5 N Y N 0 -2.241 0.839 -0.003
6 C15 C C6 N Y N 0 1.238 1.997 -0.001
7 C17 C C7 N Y N 0 3.138 3.457 0.03
8 C21 C C8 N Y N 0 4.209 -0.138 0.08
9 C24 C C9 N Y N 0 4.9 -2.198 0.115
10 C26 C C10 R N N 0 2.393 -1.91 0.073
11 C28 C C11 N N N 0 2.125 -2.744 1.327
12 C1 C C12 N N N 0 -5.067 -2.27 1.461
13 C2 C C13 N N N 0 -5.348 -1.829 0.024
14 C3 C C14 N N N 0 -6.534 -2.622 -0.53
15 O4 O O1 N N N 0 -5.659 -0.434 0.005
16 C9 C C15 N N N 0 -1.142 2.886 -0.156
17 N10 N N1 N N N 0 -0.143 1.818 -0.027
18 C11 C C16 N N N 0 -0.781 0.638 0.061
19 O12 O O2 N N N 0 -0.233 -0.441 0.177
20 C14 C C17 N Y N 0 -3.315 -0.051 0.039
21 C16 C C18 N Y N 0 1.764 3.286 0.003
22 C18 C C19 N Y N 0 3.947 2.332 0.052
23 C19 C C20 N Y N 0 3.356 1.07 0.056
24 N20 N N2 N Y N 0 2.034 0.942 0.025
25 N22 N N3 N Y N 0 5.523 -0.168 0.103
26 N23 N N4 N Y N 0 5.925 -1.389 0.124
27 N25 N N5 N Y N 0 3.78 -1.438 0.087
28 C29 C C21 N N N 0 2.159 -2.77 -1.171
29 O30 O O3 N N N 0 0.779 -3.133 -1.246
30 H1 H H1 N N N 0 -5.856 2.163 -0.239
31 H2 H H2 N N N 0 -3.963 3.737 -0.323
32 H3 H H3 N N N 0 3.57 4.447 0.033
33 H4 H H4 N N N 0 4.938 -3.278 0.128
34 H5 H H5 N N N 0 1.718 -1.054 0.055
35 H6 H H6 N N N 0 1.093 -3.095 1.316
36 H7 H H7 N N N 0 2.8 -3.6 1.345
37 H8 H H8 N N N 0 2.292 -2.132 2.213
38 H9 H H9 N N N 0 -4.83 -3.334 1.475
39 H10 H H10 N N N 0 -4.223 -1.705 1.856
40 H11 H H11 N N N 0 -5.947 -2.086 2.077
41 H12 H H12 N N N 0 -4.468 -2.013 -0.592
42 H13 H H13 N N N 0 -7.414 -2.438 0.085
43 H14 H H14 N N N 0 -6.734 -2.308 -1.555
44 H15 H H15 N N N 0 -6.297 -3.686 -0.516
45 H16 H H16 N N N 0 -1.003 3.416 -1.099
46 H17 H H17 N N N 0 -1.058 3.579 0.68
47 H18 H H18 N N N 0 -3.136 -1.111 0.142
48 H19 H H19 N N N 0 1.108 4.143 -0.015
49 H20 H H20 N N N 0 5.022 2.432 0.073
50 H21 H H21 N N N 0 2.435 -2.204 -2.061
51 H22 H H22 N N N 0 2.77 -3.671 -1.11
52 H23 H H23 N N N 0 0.558 -3.68 -2.013