Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 6V2

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 68


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O3 O O3 N N N 0 -2.876 2.151 0.326
2 S S S N N N 0 -3.674 1.159 0.957
3 O2 O O2 N N N 0 -4.27 1.396 2.225
4 C20 C C20 N N N 0 -4.894 0.488 -0.205
5 C21 C C21 N Y N 0 -5.978 1.508 -0.439
6 C26 C C26 N Y N 0 -5.852 2.429 -1.462
7 C25 C C25 N Y N 0 -6.847 3.365 -1.676
8 C24 C C24 N Y N 0 -7.968 3.38 -0.868
9 C23 C C23 N Y N 0 -8.095 2.458 0.155
10 C22 C C22 N Y N 0 -7.102 1.52 0.366
11 N4 N N4 N N N 0 -2.627 -0.096 1.227
12 C12 C C12 R N N 0 -1.815 -0.621 0.126
13 C13 C C13 N N N 0 -1.626 -2.129 0.306
14 C14 C C14 N Y N 0 -2.958 -2.821 0.171
15 C19 C C19 N Y N 0 -3.358 -3.318 -1.055
16 C18 C C18 N Y N 0 -4.579 -3.953 -1.179
17 C17 C C17 N Y N 0 -5.401 -4.091 -0.076
18 C16 C C16 N Y N 0 -5.001 -3.595 1.15
19 C15 C C15 N Y N 0 -3.778 -2.964 1.275
20 C11 C C11 N N N 0 -0.469 0.057 0.127
21 O1 O O1 N N N 0 -0.088 0.648 1.116
22 N N N N N N 0 0.312 0.007 -0.97
23 C C C N N N 0 -0.183 -0.632 -2.193
24 C1 C C1 N N N 0 1.655 0.591 -0.941
25 C2 C C2 N N N 0 2.647 -0.453 -0.497
26 O O O N N N 0 2.269 -1.574 -0.23
27 N1 N N1 N N N 0 3.954 -0.14 -0.395
28 C3 C C3 N N N 0 4.918 -1.155 0.037
29 C4 C C4 N Y N 0 6.3 -0.555 0.067
30 C9 C C9 N Y N 0 6.765 0.048 1.223
31 C8 C C8 N Y N 0 8.029 0.6 1.256
32 C7 C C7 N Y N 0 8.839 0.549 0.122
33 C10 C C10 N N N 0 10.197 1.14 0.151
34 N3 N N3 N N N 0 10.637 1.707 1.238
35 N2 N N2 N N N 0 10.995 1.088 -0.971
36 C6 C C6 N Y N 0 8.365 -0.059 -1.04
37 C5 C C5 N Y N 0 7.101 -0.613 -1.059
38 H201 H H201 N N N 0 -4.405 0.255 -1.151
39 H202 H H202 N N N 0 -5.332 -0.419 0.211
40 H4 H H4 N N N 0 -2.551 -0.482 2.113
41 H26 H H26 N N N 0 -4.976 2.418 -2.094
42 H22 H H22 N N N 0 -7.203 0.798 1.163
43 H25 H H25 N N N 0 -6.748 4.085 -2.476
44 H24 H H24 N N N 0 -8.745 4.111 -1.035
45 H23 H H23 N N N 0 -8.97 2.47 0.787
46 H12 H H12 N N N 0 -2.318 -0.428 -0.821
47 H131 H H131 N N N 0 -0.943 -2.503 -0.456
48 H132 H H132 N N N 0 -1.212 -2.328 1.295
49 H19 H H19 N N N 0 -2.715 -3.21 -1.917
50 H15 H H15 N N N 0 -3.464 -2.579 2.234
51 H18 H H18 N N N 0 -4.891 -4.34 -2.138
52 H17 H H17 N N N 0 -6.356 -4.587 -0.173
53 H16 H H16 N N N 0 -5.644 -3.703 2.012
54 HC1 H HC1 N N N 0 -0.774 0.085 -2.763
55 HC2 H HC2 N N N 0 0.661 -0.967 -2.795
56 HC3 H HC3 N N N 0 -0.804 -1.488 -1.929
57 H11C H H11C N N N 0 1.92 0.942 -1.938
58 H12C H H12C N N N 0 1.672 1.428 -0.244
59 H1 H H1 N N N 0 4.256 0.756 -0.608
60 H31C H H31C N N N 0 4.653 -1.507 1.034
61 H32C H H32C N N N 0 4.901 -1.993 -0.66
62 H9 H H9 N N N 0 6.136 0.086 2.101
63 H5 H H5 N N N 0 6.735 -1.088 -1.957
64 H8 H H8 N N N 0 8.39 1.07 2.159
65 H6 H H6 N N N 0 8.988 -0.101 -1.921
66 H3 H H3 N N N 0 11.526 2.094 1.257
67 H21N H H21N N N N 0 10.667 0.666 -1.78
68 H22N H H22N N N N 0 11.884 1.475 -0.951