data_6V2
#
_chem_comp.id 6V2
_chem_comp.name
(2R)-2-(benzylsulfonylamino)-N-(2-((4-carbamimidoylphenyl)methylamino)-2-oxo-ethyl)-N-methyl-3-phenyl-propanamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H31 N5 O4 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-03-16
_chem_comp.pdbx_modified_date 2016-01-22
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 521.631
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 6V2
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4UFF
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6V2 O3 O3 O 0 1 N N N N N N 60.702 -10.834 164.384 -2.876 2.151 0.326 O3 6V2 1
6V2 S S S 0 1 N N N N N N 59.763 -10.005 165.080 -3.674 1.159 0.957 S 6V2 2
6V2 O2 O2 O 0 1 N N N N N N 58.649 -10.610 165.742 -4.270 1.396 2.225 O2 6V2 3
6V2 C20 C20 C 0 1 N N N N N N 59.107 -8.790 163.952 -4.894 0.488 -0.205 C20 6V2 4
6V2 C21 C21 C 0 1 Y N N N N N 58.014 -9.351 163.082 -5.978 1.508 -0.439 C21 6V2 5
6V2 C26 C26 C 0 1 Y N N N N N 58.314 -10.200 162.031 -5.852 2.429 -1.462 C26 6V2 6
6V2 C25 C25 C 0 1 Y N N N N N 57.307 -10.721 161.236 -6.847 3.365 -1.676 C25 6V2 7
6V2 C24 C24 C 0 1 Y N N N N N 55.991 -10.399 161.485 -7.968 3.380 -0.868 C24 6V2 8
6V2 C23 C23 C 0 1 Y N N N N N 55.682 -9.554 162.529 -8.095 2.458 0.155 C23 6V2 9
6V2 C22 C22 C 0 1 Y N N N N N 56.688 -9.032 163.323 -7.102 1.520 0.366 C22 6V2 10
6V2 N4 N4 N 0 1 N N N N N N 60.593 -9.202 166.215 -2.627 -0.096 1.227 N4 6V2 11
6V2 C12 C12 C 0 1 N N R N N N 61.966 -8.718 166.109 -1.815 -0.621 0.126 C12 6V2 12
6V2 C13 C13 C 0 1 N N N N N N 62.545 -8.532 167.520 -1.626 -2.129 0.306 C13 6V2 13
6V2 C14 C14 C 0 1 Y N N N N N 63.918 -7.908 167.524 -2.958 -2.821 0.171 C14 6V2 14
6V2 C19 C19 C 0 1 Y N N N N N 64.109 -6.621 167.998 -3.358 -3.318 -1.055 C19 6V2 15
6V2 C18 C18 C 0 1 Y N N N N N 65.363 -6.037 167.976 -4.579 -3.953 -1.179 C18 6V2 16
6V2 C17 C17 C 0 1 Y N N N N N 66.445 -6.736 167.487 -5.401 -4.091 -0.076 C17 6V2 17
6V2 C16 C16 C 0 1 Y N N N N N 66.272 -8.021 167.024 -5.001 -3.595 1.150 C16 6V2 18
6V2 C15 C15 C 0 1 Y N N N N N 65.017 -8.605 167.042 -3.778 -2.964 1.275 C15 6V2 19
6V2 C11 C11 C 0 1 N N N N N N 61.850 -7.359 165.416 -0.469 0.057 0.127 C11 6V2 20
6V2 O1 O1 O 0 1 N N N N N N 60.967 -6.586 165.750 -0.088 0.648 1.116 O1 6V2 21
6V2 N N N 0 1 N N N N N N 62.746 -7.013 164.467 0.312 0.007 -0.970 N 6V2 22
6V2 C C C 0 1 N N N N N N 63.823 -7.880 164.004 -0.183 -0.632 -2.193 C 6V2 23
6V2 C1 C1 C 0 1 N N N N N N 62.662 -5.695 163.859 1.655 0.591 -0.941 C1 6V2 24
6V2 C2 C2 C 0 1 N N N N N N 61.377 -5.542 163.066 2.647 -0.453 -0.497 C2 6V2 25
6V2 O O O 0 1 N N N N N N 60.909 -6.478 162.423 2.269 -1.574 -0.230 O 6V2 26
6V2 N1 N1 N 0 1 N N N N N N 60.794 -4.350 163.128 3.954 -0.140 -0.395 N1 6V2 27
6V2 C3 C3 C 0 1 N N N N N N 59.526 -4.109 162.455 4.918 -1.155 0.037 C3 6V2 28
6V2 C4 C4 C 0 1 Y N N N N N 58.350 -4.074 163.401 6.300 -0.555 0.067 C4 6V2 29
6V2 C9 C9 C 0 1 Y N N N N N 57.855 -2.867 163.862 6.765 0.048 1.223 C9 6V2 30
6V2 C8 C8 C 0 1 Y N N N N N 56.827 -2.824 164.785 8.029 0.600 1.256 C8 6V2 31
6V2 C7 C7 C 0 1 Y N N N N N 56.255 -3.994 165.269 8.839 0.549 0.122 C7 6V2 32
6V2 C10 C10 C 0 1 N N N N N N 55.160 -3.937 166.260 10.197 1.140 0.151 C10 6V2 33
6V2 N3 N3 N 0 1 N N N N N N 54.817 -2.860 166.873 10.637 1.707 1.238 N3 6V2 34
6V2 N2 N2 N 0 1 N N N N N N 54.488 -5.064 166.521 10.995 1.088 -0.971 N2 6V2 35
6V2 C6 C6 C 0 1 Y N N N N N 56.742 -5.211 164.795 8.365 -0.059 -1.040 C6 6V2 36
6V2 C5 C5 C 0 1 Y N N N N N 57.774 -5.244 163.873 7.101 -0.613 -1.059 C5 6V2 37
6V2 H201 H201 H 0 0 N N N N N N 58.700 -7.950 164.534 -4.405 0.255 -1.151 H201 6V2 38
6V2 H202 H202 H 0 0 N N N N N N 59.922 -8.429 163.308 -5.332 -0.419 0.211 H202 6V2 39
6V2 H4 H4 H 0 1 N N N N N N 60.045 -8.388 166.410 -2.551 -0.482 2.113 H4 6V2 40
6V2 H26 H26 H 0 1 N N N N N N 59.343 -10.459 161.829 -4.976 2.418 -2.094 H26 6V2 41
6V2 H22 H22 H 0 1 N N N N N N 56.437 -8.370 164.138 -7.203 0.798 1.163 H22 6V2 42
6V2 H25 H25 H 0 1 N N N N N N 57.554 -11.382 160.418 -6.748 4.085 -2.476 H25 6V2 43
6V2 H24 H24 H 0 1 N N N N N N 55.206 -10.806 160.866 -8.745 4.111 -1.035 H24 6V2 44
6V2 H23 H23 H 0 1 N N N N N N 54.652 -9.298 162.728 -8.970 2.470 0.787 H23 6V2 45
6V2 H12 H12 H 0 1 N N N N N N 62.595 -9.402 165.520 -2.318 -0.428 -0.821 H12 6V2 46
6V2 H131 H131 H 0 0 N N N N N N 61.866 -7.884 168.094 -0.943 -2.503 -0.456 H131 6V2 47
6V2 H132 H132 H 0 0 N N N N N N 62.608 -9.518 168.004 -1.212 -2.328 1.295 H132 6V2 48
6V2 H19 H19 H 0 1 N N N N N N 63.269 -6.066 168.390 -2.715 -3.210 -1.917 H19 6V2 49
6V2 H15 H15 H 0 1 N N N N N N 64.892 -9.614 166.677 -3.464 -2.579 2.234 H15 6V2 50
6V2 H18 H18 H 0 1 N N N N N N 65.494 -5.030 168.343 -4.891 -4.340 -2.138 H18 6V2 51
6V2 H17 H17 H 0 1 N N N N N N 67.423 -6.279 167.467 -6.356 -4.587 -0.173 H17 6V2 52
6V2 H16 H16 H 0 1 N N N N N N 67.118 -8.575 166.646 -5.644 -3.703 2.012 H16 6V2 53
6V2 HC1 HC1 H 0 1 N N N N N N 64.406 -7.360 163.230 -0.774 0.085 -2.763 HC1 6V2 54
6V2 HC2 HC2 H 0 1 N N N N N N 64.479 -8.133 164.850 0.661 -0.967 -2.795 HC2 6V2 55
6V2 HC3 HC3 H 0 1 N N N N N N 63.396 -8.802 163.583 -0.804 -1.488 -1.929 HC3 6V2 56
6V2 H11C H11C H 0 0 N N N N N N 62.689 -4.932 164.650 1.920 0.942 -1.938 H11C 6V2 57
6V2 H12C H12C H 0 0 N N N N N N 63.520 -5.555 163.185 1.672 1.428 -0.244 H12C 6V2 58
6V2 H1 H1 H 0 1 N N N N N N 61.230 -3.611 163.642 4.256 0.756 -0.608 H1 6V2 59
6V2 H31C H31C H 0 0 N N N N N N 59.585 -3.142 161.934 4.653 -1.507 1.034 H31C 6V2 60
6V2 H32C H32C H 0 0 N N N N N N 59.361 -4.912 161.721 4.901 -1.993 -0.660 H32C 6V2 61
6V2 H9 H9 H 0 1 N N N N N N 58.279 -1.944 163.495 6.136 0.086 2.101 H9 6V2 62
6V2 H5 H5 H 0 1 N N N N N N 58.137 -6.196 163.515 6.735 -1.088 -1.957 H5 6V2 63
6V2 H8 H8 H 0 1 N N N N N N 56.464 -1.869 165.134 8.390 1.070 2.159 H8 6V2 64
6V2 H6 H6 H 0 1 N N N N N N 56.311 -6.135 165.150 8.988 -0.101 -1.921 H6 6V2 65
6V2 H3 H3 H 0 1 N N N N N N 54.052 -3.012 167.499 11.526 2.094 1.257 H3 6V2 66
6V2 H21N H21N H 0 0 N N N N N N 53.737 -5.057 167.181 10.667 0.666 -1.780 H21N 6V2 67
6V2 H22N H22N H 0 0 N N N N N N 54.737 -5.914 166.056 11.884 1.475 -0.951 H22N 6V2 68
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6V2 O3 S DOUB N N 1
6V2 S O2 DOUB N N 2
6V2 S C20 SING N N 3
6V2 S N4 SING N N 4
6V2 C20 C21 SING N N 5
6V2 C21 C26 SING Y N 6
6V2 C21 C22 DOUB Y N 7
6V2 C26 C25 DOUB Y N 8
6V2 C25 C24 SING Y N 9
6V2 C24 C23 DOUB Y N 10
6V2 C23 C22 SING Y N 11
6V2 N4 C12 SING N N 12
6V2 C12 C13 SING N N 13
6V2 C12 C11 SING N N 14
6V2 C13 C14 SING N N 15
6V2 C14 C19 SING Y N 16
6V2 C14 C15 DOUB Y N 17
6V2 C19 C18 DOUB Y N 18
6V2 C18 C17 SING Y N 19
6V2 C17 C16 DOUB Y N 20
6V2 C16 C15 SING Y N 21
6V2 C11 O1 DOUB N N 22
6V2 C11 N SING N N 23
6V2 N C SING N N 24
6V2 N C1 SING N N 25
6V2 C1 C2 SING N N 26
6V2 C2 O DOUB N N 27
6V2 C2 N1 SING N N 28
6V2 N1 C3 SING N N 29
6V2 C3 C4 SING N N 30
6V2 C4 C9 SING Y N 31
6V2 C4 C5 DOUB Y N 32
6V2 C9 C8 DOUB Y N 33
6V2 C8 C7 SING Y N 34
6V2 C7 C10 SING N N 35
6V2 C7 C6 DOUB Y N 36
6V2 C10 N3 DOUB N N 37
6V2 C10 N2 SING N N 38
6V2 C6 C5 SING Y N 39
6V2 C20 H201 SING N N 40
6V2 C20 H202 SING N N 41
6V2 N4 H4 SING N N 42
6V2 C26 H26 SING N N 43
6V2 C22 H22 SING N N 44
6V2 C25 H25 SING N N 45
6V2 C24 H24 SING N N 46
6V2 C23 H23 SING N N 47
6V2 C12 H12 SING N N 48
6V2 C13 H131 SING N N 49
6V2 C13 H132 SING N N 50
6V2 C19 H19 SING N N 51
6V2 C15 H15 SING N N 52
6V2 C18 H18 SING N N 53
6V2 C17 H17 SING N N 54
6V2 C16 H16 SING N N 55
6V2 C HC1 SING N N 56
6V2 C HC2 SING N N 57
6V2 C HC3 SING N N 58
6V2 C1 H11C SING N N 59
6V2 C1 H12C SING N N 60
6V2 N1 H1 SING N N 61
6V2 C3 H31C SING N N 62
6V2 C3 H32C SING N N 63
6V2 C9 H9 SING N N 64
6V2 C5 H5 SING N N 65
6V2 C8 H8 SING N N 66
6V2 C6 H6 SING N N 67
6V2 N3 H3 SING N N 68
6V2 N2 H21N SING N N 69
6V2 N2 H22N SING N N 70
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6V2 InChI InChI 1.03 InChI=1S/C27H31N5O4S/c1-32(18-25(33)30-17-21-12-14-23(15-13-21)26(28)29)27(34)24(16-20-8-4-2-5-9-20)31-37(35,36)19-22-10-6-3-7-11-22/h2-15,24,31H,16-19H2,1H3,(H3,28,29)(H,30,33)/t24-/m1/s1
6V2 InChIKey InChI 1.03 YUCRZSXJDNYWCT-XMMPIXPASA-N
6V2 SMILES_CANONICAL CACTVS 3.385 CN(CC(=O)NCc1ccc(cc1)C(N)=N)C(=O)[C@@H](Cc2ccccc2)N[S](=O)(=O)Cc3ccccc3
6V2 SMILES CACTVS 3.385 CN(CC(=O)NCc1ccc(cc1)C(N)=N)C(=O)[CH](Cc2ccccc2)N[S](=O)(=O)Cc3ccccc3
6V2 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[H]/N=C(\c1ccc(cc1)CNC(=O)CN(C)C(=O)[C@@H](Cc2ccccc2)NS(=O)(=O)Cc3ccccc3)/N"
6V2 SMILES "OpenEye OEToolkits" 1.7.6 CN(CC(=O)NCc1ccc(cc1)C(=N)N)C(=O)C(Cc2ccccc2)NS(=O)(=O)Cc3ccccc3
#
_pdbx_chem_comp_identifier.comp_id 6V2
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 1.7.6
_pdbx_chem_comp_identifier.identifier
(2R)-N-[2-[(4-carbamimidoylphenyl)methylamino]-2-oxidanylidene-ethyl]-N-methyl-3-phenyl-2-[(phenylmethyl)sulfonylamino]propanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6V2 'Create component' 2015-03-16 EBI
6V2 'Initial release' 2016-01-27 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
6V2 O3 O 7.446 -5.889 1
6V2 S S 8.196 -4.590 2
6V2 O2 O 8.946 -3.291 3
6V2 C20 C 6.897 -3.840 4
6V2 C21 C 5.598 -4.590 5
6V2 C26 C 4.299 -3.840 6
6V2 C25 C 3.000 -4.590 7
6V2 C24 C 3.000 -6.090 8
6V2 C23 C 4.299 -6.840 9
6V2 C22 C 5.598 -6.090 10
6V2 N4 N 9.495 -5.340 11
6V2 C12 C 10.794 -4.590 12
6V2 C13 C 12.093 -5.340 13
6V2 C14 C 12.093 -6.840 14
6V2 C19 C 10.794 -7.590 15
6V2 C18 C 10.794 -9.090 16
6V2 C17 C 12.093 -9.840 17
6V2 C16 C 13.392 -9.090 18
6V2 C15 C 13.392 -7.590 19
6V2 C11 C 10.794 -3.090 20
6V2 O1 O 9.495 -2.340 21
6V2 N N 12.093 -2.340 22
6V2 C C 13.392 -3.090 23
6V2 C1 C 12.093 -0.840 24
6V2 C2 C 13.392 -0.090 25
6V2 O O 14.691 -0.840 26
6V2 N1 N 13.392 1.410 27
6V2 C3 C 14.691 2.160 28
6V2 C4 C 14.691 3.660 29
6V2 C9 C 15.990 4.410 30
6V2 C8 C 15.990 5.910 31
6V2 C7 C 14.691 6.660 32
6V2 C10 C 14.691 8.160 33
6V2 N3 N 15.990 8.910 34
6V2 N2 N 13.392 8.910 35
6V2 C6 C 13.392 5.910 36
6V2 C5 C 13.392 4.410 37
6V2 H3 H 17.289 8.160 38
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
6V2 O3 S DOUBLE NONE 1
6V2 S O2 DOUBLE NONE 2
6V2 S C20 SINGLE NONE 3
6V2 S N4 SINGLE NONE 4
6V2 C20 C21 SINGLE NONE 5
6V2 C21 C26 DOUBLE NONE 6
6V2 C21 C22 SINGLE NONE 7
6V2 C26 C25 SINGLE NONE 8
6V2 C25 C24 DOUBLE NONE 9
6V2 C24 C23 SINGLE NONE 10
6V2 C23 C22 DOUBLE NONE 11
6V2 N4 C12 SINGLE NONE 12
6V2 C12 C13 SINGLE BEGINWEDGE 13
6V2 C12 C11 SINGLE NONE 14
6V2 C13 C14 SINGLE NONE 15
6V2 C14 C19 DOUBLE NONE 16
6V2 C14 C15 SINGLE NONE 17
6V2 C19 C18 SINGLE NONE 18
6V2 C18 C17 DOUBLE NONE 19
6V2 C17 C16 SINGLE NONE 20
6V2 C16 C15 DOUBLE NONE 21
6V2 C11 O1 DOUBLE NONE 22
6V2 C11 N SINGLE NONE 23
6V2 N C SINGLE NONE 24
6V2 N C1 SINGLE NONE 25
6V2 C1 C2 SINGLE NONE 26
6V2 C2 O DOUBLE NONE 27
6V2 C2 N1 SINGLE NONE 28
6V2 N1 C3 SINGLE NONE 29
6V2 C3 C4 SINGLE NONE 30
6V2 C4 C9 DOUBLE NONE 31
6V2 C4 C5 SINGLE NONE 32
6V2 C9 C8 SINGLE NONE 33
6V2 C8 C7 DOUBLE NONE 34
6V2 C7 C10 SINGLE ENDUPRIGHT 35
6V2 C7 C6 SINGLE NONE 36
6V2 C10 N3 DOUBLE NONE 37
6V2 C10 N2 SINGLE ENDUPRIGHT 38
6V2 C6 C5 DOUBLE NONE 39
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
6V2 MurckoScaffold S1 scaffold 'O=C(CNC(=O)[C@@H](Cc1ccccc1)NS(=O)(=O)Cc1ccccc1)NCc1ccccc1' InChI=1S/C25H27N3O4S/c29-24(26-17-21-12-6-2-7-13-21)18-27-25(30)23(16-20-10-4-1-5-11-20)28-33(31,32)19-22-14-8-3-9-15-22/h1-15,23,28H,16-19H2,(H,26,29)(H,27,30)/t23-/m1/s1 RONVTLFWPPKVKN-HSZRJFAPSA-N
6V2 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
6V2 peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
6V2 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
6V2 Z133621020 F4 fragment CNS(=O)(=O)Cc1ccccc1 InChI=1S/C8H11NO2S/c1-9-12(10,11)7-8-5-3-2-4-6-8/h2-6,9H,7H2,1H3 NYLBABUQWKLNCW-UHFFFAOYSA-N
6V2 Z45617795 F5 fragment CS(=O)(=O)NCCc1ccccc1 InChI=1S/C9H13NO2S/c1-13(11,12)10-8-7-9-5-3-2-4-6-9/h2-6,10H,7-8H2,1H3 JGDDFCYMSLNOGJ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
6V2 O3 S1 1
6V2 S S1 1
6V2 O2 S1 1
6V2 C20 S1 1
6V2 C21 S1 1
6V2 C26 S1 1
6V2 C25 S1 1
6V2 C24 S1 1
6V2 C23 S1 1
6V2 C22 S1 1
6V2 N4 S1 1
6V2 C12 S1 1
6V2 C13 S1 1
6V2 C14 S1 1
6V2 C19 S1 1
6V2 C18 S1 1
6V2 C17 S1 1
6V2 C16 S1 1
6V2 C15 S1 1
6V2 C11 S1 1
6V2 O1 S1 1
6V2 N S1 1
6V2 C1 S1 1
6V2 C2 S1 1
6V2 O S1 1
6V2 N1 S1 1
6V2 C3 S1 1
6V2 C4 S1 1
6V2 C9 S1 1
6V2 C8 S1 1
6V2 C7 S1 1
6V2 C6 S1 1
6V2 C5 S1 1
6V2 N F1 1
6V2 C11 F1 1
6V2 O1 F1 1
6V2 C12 F1 1
6V2 N1 F1 2
6V2 C2 F1 2
6V2 O F1 2
6V2 C1 F1 2
6V2 O1 F2 1
6V2 C11 F2 1
6V2 C12 F2 1
6V2 N4 F2 1
6V2 O F2 2
6V2 C2 F2 2
6V2 C1 F2 2
6V2 N F2 2
6V2 C21 F3 1
6V2 C26 F3 1
6V2 C25 F3 1
6V2 C24 F3 1
6V2 C23 F3 1
6V2 C22 F3 1
6V2 C14 F3 2
6V2 C19 F3 2
6V2 C18 F3 2
6V2 C17 F3 2
6V2 C16 F3 2
6V2 C15 F3 2
6V2 C4 F3 3
6V2 C9 F3 3
6V2 C8 F3 3
6V2 C7 F3 3
6V2 C6 F3 3
6V2 C5 F3 3
6V2 C12 F4 1
6V2 N4 F4 1
6V2 S F4 1
6V2 O3 F4 1
6V2 O2 F4 1
6V2 C20 F4 1
6V2 C21 F4 1
6V2 C26 F4 1
6V2 C25 F4 1
6V2 C24 F4 1
6V2 C23 F4 1
6V2 C22 F4 1
6V2 C20 F5 1
6V2 S F5 1
6V2 O3 F5 1
6V2 O2 F5 1
6V2 N4 F5 1
6V2 C12 F5 1
6V2 C13 F5 1
6V2 C14 F5 1
6V2 C19 F5 1
6V2 C18 F5 1
6V2 C17 F5 1
6V2 C16 F5 1
6V2 C15 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 6V2
_pdbe_chem_comp_rdkit_properties.exactmw 521.210
_pdbe_chem_comp_rdkit_properties.amw 521.643
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 13
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 37
_pdbe_chem_comp_rdkit_properties.NumAtoms 68
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.222
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 260.643
_pdbe_chem_comp_rdkit_properties.tpsa 145.450
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.557
_pdbe_chem_comp_rdkit_properties.CrippenMR 142.013
_pdbe_chem_comp_rdkit_properties.chi0v 18.594
_pdbe_chem_comp_rdkit_properties.chi1v 10.607
_pdbe_chem_comp_rdkit_properties.chi2v 4.302
_pdbe_chem_comp_rdkit_properties.chi3v 4.302
_pdbe_chem_comp_rdkit_properties.chi4v 2.753
_pdbe_chem_comp_rdkit_properties.chi0n 48.777
_pdbe_chem_comp_rdkit_properties.chi1n 24.403
_pdbe_chem_comp_rdkit_properties.chi2n 3.417
_pdbe_chem_comp_rdkit_properties.chi3n 3.417
_pdbe_chem_comp_rdkit_properties.chi4n 1.983
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.020
_pdbe_chem_comp_rdkit_properties.kappa1 7.748
_pdbe_chem_comp_rdkit_properties.kappa2 12.794
_pdbe_chem_comp_rdkit_properties.kappa3 8.853
_pdbe_chem_comp_rdkit_properties.Phi 2.679
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
6V2 UniChem ZINC ZINC000263621308
6V2 UniChem PubChem 114286453
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
6V2 O3 -3.105 -0.497 2.742 ETKDGv3 1
6V2 S -2.682 -0.419 1.302 ETKDGv3 2
6V2 O2 -1.195 -0.202 1.253 ETKDGv3 3
6V2 C20 -3.514 0.969 0.539 ETKDGv3 4
6V2 C21 -3.106 2.249 1.212 ETKDGv3 5
6V2 C26 -2.046 2.949 0.766 ETKDGv3 6
6V2 C25 -1.621 4.181 1.462 ETKDGv3 7
6V2 C24 -2.283 4.600 2.547 ETKDGv3 8
6V2 C23 -3.440 3.831 3.050 ETKDGv3 9
6V2 C22 -3.830 2.716 2.420 ETKDGv3 10
6V2 N4 -3.101 -1.925 0.524 ETKDGv3 11
6V2 C12 -2.703 -1.946 -0.895 ETKDGv3 12
6V2 C13 -3.333 -3.159 -1.620 ETKDGv3 13
6V2 C14 -2.917 -4.489 -1.039 ETKDGv3 14
6V2 C19 -3.570 -5.019 0.012 ETKDGv3 15
6V2 C18 -3.139 -6.312 0.583 ETKDGv3 16
6V2 C17 -2.094 -6.962 0.059 ETKDGv3 17
6V2 C16 -1.370 -6.389 -1.094 ETKDGv3 18
6V2 C15 -1.759 -5.219 -1.616 ETKDGv3 19
6V2 C11 -1.192 -1.972 -1.034 ETKDGv3 20
6V2 O1 -0.532 -2.710 -0.250 ETKDGv3 21
6V2 N -0.491 -1.191 -2.031 ETKDGv3 22
6V2 C -1.220 -0.452 -3.069 ETKDGv3 23
6V2 C1 0.976 -1.111 -1.983 ETKDGv3 24
6V2 C2 1.403 -0.242 -0.839 ETKDGv3 25
6V2 O 1.944 -0.765 0.172 ETKDGv3 26
6V2 N1 1.164 1.172 -0.885 ETKDGv3 27
6V2 C3 1.519 2.065 0.215 ETKDGv3 28
6V2 C4 3.012 2.229 0.293 ETKDGv3 29
6V2 C9 3.716 1.691 1.303 ETKDGv3 30
6V2 C8 5.185 1.845 1.353 ETKDGv3 31
6V2 C7 5.838 2.528 0.392 ETKDGv3 32
6V2 C10 7.313 2.689 0.443 ETKDGv3 33
6V2 N3 8.033 1.829 1.093 ETKDGv3 34
6V2 N2 7.952 3.792 -0.213 ETKDGv3 35
6V2 C6 5.054 3.104 -0.734 ETKDGv3 36
6V2 C5 3.724 2.963 -0.777 ETKDGv3 37
6V2 H201 -3.266 1.018 -0.540 ETKDGv3 38
6V2 H202 -4.612 0.826 0.627 ETKDGv3 39
6V2 H4 -4.144 -1.988 0.576 ETKDGv3 40
6V2 H26 -1.491 2.617 -0.103 ETKDGv3 41
6V2 H22 -4.675 2.155 2.797 ETKDGv3 42
6V2 H25 -0.771 4.741 1.094 ETKDGv3 43
6V2 H24 -1.971 5.501 3.060 ETKDGv3 44
6V2 H23 -3.969 4.170 3.932 ETKDGv3 45
6V2 H12 -3.120 -1.050 -1.392 ETKDGv3 46
6V2 H131 -3.057 -3.126 -2.696 ETKDGv3 47
6V2 H132 -4.441 -3.070 -1.588 ETKDGv3 48
6V2 H19 -4.418 -4.508 0.452 ETKDGv3 49
6V2 H15 -1.221 -4.804 -2.459 ETKDGv3 50
6V2 H18 -3.670 -6.730 1.428 ETKDGv3 51
6V2 H17 -1.776 -7.908 0.477 ETKDGv3 52
6V2 H16 -0.524 -6.917 -1.515 ETKDGv3 53
6V2 HC1 -1.906 -1.135 -3.611 ETKDGv3 54
6V2 HC2 -0.531 -0.002 -3.814 ETKDGv3 55
6V2 HC3 -1.797 0.376 -2.606 ETKDGv3 56
6V2 H11C 1.389 -0.685 -2.922 ETKDGv3 57
6V2 H12C 1.408 -2.131 -1.882 ETKDGv3 58
6V2 H1 0.692 1.579 -1.724 ETKDGv3 59
6V2 H31C 1.092 1.678 1.166 ETKDGv3 60
6V2 H32C 1.066 3.064 0.036 ETKDGv3 61
6V2 H9 3.221 1.138 2.091 ETKDGv3 62
6V2 H5 3.167 3.380 -1.608 ETKDGv3 63
6V2 H8 5.719 1.410 2.189 ETKDGv3 64
6V2 H6 5.550 3.619 -1.545 ETKDGv3 65
6V2 H3 9.073 1.913 1.153 ETKDGv3 66
6V2 H21N 8.994 3.867 -0.231 ETKDGv3 67
6V2 H22N 7.401 4.580 -0.615 ETKDGv3 68
#