Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 5Y1

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 54


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C6 C C1 N Y N 0 -4.849 -0.21 -0.111
2 C4 C C2 N Y N 0 -3.828 1.9 0.394
3 C3 C C3 N N N 0 -2.642 2.687 0.891
4 C2 C C4 N N N 0 -1.658 2.913 -0.257
5 C1 C C5 N N N 0 0.743 2.738 -0.249
6 C10 C C6 N N N 0 2.009 1.964 -0.2
7 C11 C C7 N N N 0 3.162 -0.05 -0.078
8 C12 C C8 N Y N 0 3.043 -1.522 -0.067
9 C13 C C9 N Y N 0 4.19 -2.323 -0.084
10 C14 C C10 N Y N 0 4.069 -3.696 -0.081
11 C15 C C11 N Y N 0 2.817 -4.287 -0.055
12 C16 C C12 N Y N 0 1.674 -3.5 -0.029
13 C17 C C13 N N N 0 -0.677 -3.193 -0.011
14 C18 C C14 N N N 0 -1.934 -3.937 0.443
15 C19 C C15 N N N 0 -3.156 -3.349 -0.268
16 C20 C C16 N N N 0 -3.717 -2.191 0.558
17 C21 C C17 N Y N 0 1.781 -2.12 -0.038
18 C22 C C18 R N N 0 3.352 2.672 -0.229
19 C23 C C19 N N N 0 4.577 1.789 -0.083
20 C5 C C20 N Y N 0 -3.761 0.52 0.345
21 C7 C C21 N Y N 0 -6.002 0.447 -0.517
22 C8 C C22 N Y N 0 -6.067 1.827 -0.467
23 C9 C C23 N Y N 0 -4.978 2.55 -0.016
24 N1 N N1 N N N 0 -0.441 2.105 -0.022
25 N2 N N2 N N N 0 2.016 0.663 -0.124
26 N3 N N3 N N N 0 4.37 0.465 -0.043
27 O1 O O1 N N N 0 0.764 3.928 -0.49
28 O2 O O2 N N N 0 0.444 -4.08 0.009
29 O3 O O3 N N N 0 -4.789 -1.568 -0.153
30 O4 O O4 N N N 0 3.371 3.634 0.828
31 O5 O O5 N N N 0 5.694 2.259 -0.007
32 H1 H H1 N N N 0 -2.98 3.649 1.275
33 H2 H H2 N N N 0 -2.147 2.132 1.688
34 H3 H H3 N N N 0 -2.119 2.612 -1.197
35 H4 H H4 N N N 0 -1.391 3.969 -0.304
36 H5 H H5 N N N 0 5.168 -1.866 -0.099
37 H6 H H6 N N N 0 4.955 -4.314 -0.1
38 H9 H H9 N N N 0 -0.488 -2.356 0.661
39 H7 H H7 N N N 0 2.73 -5.363 -0.055
40 H8 H H8 N N N 0 -0.824 -2.817 -1.023
41 H10 H H10 N N N 0 -1.841 -4.994 0.194
42 H11 H H11 N N N 0 -2.053 -3.826 1.521
43 H12 H H12 N N N 0 -2.863 -2.985 -1.253
44 H13 H H13 N N N 0 -3.918 -4.121 -0.378
45 H14 H H14 N N N 0 -4.086 -2.57 1.511
46 H15 H H15 N N N 0 -2.93 -1.459 0.74
47 H16 H H16 N N N 0 0.892 -1.508 -0.022
48 H17 H H17 N N N 0 3.432 3.209 -1.174
49 H18 H H18 N N N 0 -2.863 0.011 0.663
50 H19 H H19 N N N 0 -6.849 -0.12 -0.872
51 H20 H H20 N N N 0 -6.965 2.338 -0.781
52 H21 H H21 N N N 0 -5.026 3.629 0.017
53 H22 H H22 N N N 0 -0.484 1.182 0.275
54 H23 H H23 N N N 0 4.194 4.137 0.887