data_5Y1
#
_chem_comp.id 5Y1
_chem_comp.name
(5R)-5-hydroxy-16,21-dioxa-3,8,28-triazatetracyclo[20.3.1.1~2,6~.1~11,15~]octacosa-1(26),2,6(28),11(27),12,14,22,24-octaene-4,7-dione
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H23 N3 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-07-27
_chem_comp.pdbx_modified_date 2022-07-22
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 421.446
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 5Y1
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7RKP
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5Y1 C6 C1 C 0 1 Y N N N N N 10.523 40.192 -11.416 -4.849 -0.210 -0.111 C6 5Y1 1
5Y1 C4 C2 C 0 1 Y N N N N N 12.628 41.245 -11.898 -3.828 1.900 0.394 C4 5Y1 2
5Y1 C3 C3 C 0 1 N N N N N N 13.453 42.231 -12.722 -2.642 2.687 0.891 C3 5Y1 3
5Y1 C2 C4 C 0 1 N N N N N N 13.226 41.931 -14.201 -1.658 2.913 -0.257 C2 5Y1 4
5Y1 C1 C5 C 0 1 N N N N N N 14.900 42.061 -16.170 0.743 2.738 -0.249 C1 5Y1 5
5Y1 C10 C6 C 0 1 N N N N N N 14.733 40.624 -16.688 2.009 1.964 -0.200 C10 5Y1 6
5Y1 C11 C7 C 0 1 N N N N N N 13.753 38.515 -16.635 3.162 -0.050 -0.078 C11 5Y1 7
5Y1 C12 C8 C 0 1 Y N N N N N 12.758 37.559 -15.982 3.043 -1.522 -0.067 C12 5Y1 8
5Y1 C13 C9 C 0 1 Y N N N N N 13.225 36.432 -15.327 4.190 -2.323 -0.084 C13 5Y1 9
5Y1 C14 C10 C 0 1 Y N N N N N 12.330 35.559 -14.725 4.069 -3.696 -0.081 C14 5Y1 10
5Y1 C15 C11 C 0 1 Y N N N N N 10.968 35.823 -14.777 2.817 -4.287 -0.055 C15 5Y1 11
5Y1 C16 C12 C 0 1 Y N N N N N 10.502 36.954 -15.427 1.674 -3.500 -0.029 C16 5Y1 12
5Y1 C17 C13 C 0 1 N N N N N N 8.772 38.547 -15.655 -0.677 -3.193 -0.011 C17 5Y1 13
5Y1 C18 C14 C 0 1 N N N N N N 7.531 38.864 -14.823 -1.934 -3.937 0.443 C18 5Y1 14
5Y1 C19 C15 C 0 1 N N N N N N 7.905 39.840 -13.710 -3.156 -3.349 -0.268 C19 5Y1 15
5Y1 C20 C16 C 0 1 N N N N N N 8.886 39.171 -12.748 -3.717 -2.191 0.558 C20 5Y1 16
5Y1 C21 C17 C 0 1 Y N N N N N 11.399 37.822 -16.028 1.781 -2.120 -0.038 C21 5Y1 17
5Y1 C22 C18 C 0 1 N N R N N N 15.492 40.217 -17.737 3.352 2.672 -0.229 C22 5Y1 18
5Y1 C23 C19 C 0 1 N N N N N N 15.373 38.956 -18.223 4.577 1.789 -0.083 C23 5Y1 19
5Y1 C5 C20 C 0 1 Y N N N N N 11.276 41.089 -12.161 -3.761 0.520 0.345 C5 5Y1 20
5Y1 C7 C21 C 0 1 Y N N N N N 11.127 39.452 -10.408 -6.002 0.447 -0.517 C7 5Y1 21
5Y1 C8 C22 C 0 1 Y N N N N N 12.479 39.610 -10.148 -6.067 1.827 -0.467 C8 5Y1 22
5Y1 C9 C23 C 0 1 Y N N N N N 13.226 40.505 -10.894 -4.978 2.550 -0.016 C9 5Y1 23
5Y1 N1 N1 N 0 1 N N N N N N 14.199 42.632 -15.022 -0.441 2.105 -0.022 N1 5Y1 24
5Y1 N2 N2 N 0 1 N N N N N N 13.878 39.770 -16.154 2.016 0.663 -0.124 N2 5Y1 25
5Y1 N3 N3 N 0 1 N N N N N N 14.514 38.113 -17.677 4.370 0.465 -0.043 N3 5Y1 26
5Y1 O1 O1 O 0 1 N N N N N N 15.666 42.763 -16.739 0.764 3.928 -0.490 O1 5Y1 27
5Y1 O2 O2 O 0 1 N N N N N N 9.125 37.205 -15.470 0.444 -4.080 0.009 O2 5Y1 28
5Y1 O3 O3 O 0 1 N N N N N N 9.158 40.033 -11.680 -4.789 -1.568 -0.153 O3 5Y1 29
5Y1 O4 O4 O 0 1 N N N N N N 16.405 41.105 -18.322 3.371 3.634 0.828 O4 5Y1 30
5Y1 O5 O5 O 0 1 N N N N N N 16.042 38.610 -19.139 5.694 2.259 -0.007 O5 5Y1 31
5Y1 H1 H1 H 0 1 N N N N N N 14.520 42.117 -12.479 -2.980 3.649 1.275 H1 5Y1 32
5Y1 H2 H2 H 0 1 N N N N N N 13.134 43.260 -12.498 -2.147 2.132 1.688 H2 5Y1 33
5Y1 H3 H3 H 0 1 N N N N N N 12.214 42.255 -14.484 -2.119 2.612 -1.197 H3 5Y1 34
5Y1 H4 H4 H 0 1 N N N N N N 13.325 40.848 -14.369 -1.391 3.969 -0.304 H4 5Y1 35
5Y1 H5 H5 H 0 1 N N N N N N 14.286 36.232 -15.285 5.168 -1.866 -0.099 H5 5Y1 36
5Y1 H6 H6 H 0 1 N N N N N N 12.692 34.677 -14.218 4.955 -4.314 -0.100 H6 5Y1 37
5Y1 H7 H7 H 0 1 N N N N N N 10.270 35.145 -14.309 2.730 -5.363 -0.055 H7 5Y1 38
5Y1 H8 H8 H 0 1 N N N N N N 9.603 39.193 -15.335 -0.824 -2.817 -1.023 H8 5Y1 39
5Y1 H9 H9 H 0 1 N N N N N N 8.557 38.727 -16.719 -0.488 -2.356 0.661 H9 5Y1 40
5Y1 H10 H10 H 0 1 N N N N N N 6.763 39.318 -15.467 -1.841 -4.994 0.194 H10 5Y1 41
5Y1 H11 H11 H 0 1 N N N N N N 7.138 37.936 -14.381 -2.053 -3.826 1.521 H11 5Y1 42
5Y1 H12 H12 H 0 1 N N N N N N 8.374 40.733 -14.149 -2.863 -2.985 -1.253 H12 5Y1 43
5Y1 H13 H13 H 0 1 N N N N N N 6.998 40.134 -13.162 -3.918 -4.121 -0.378 H13 5Y1 44
5Y1 H14 H14 H 0 1 N N N N N N 8.444 38.240 -12.364 -4.086 -2.570 1.511 H14 5Y1 45
5Y1 H15 H15 H 0 1 N N N N N N 9.821 38.941 -13.280 -2.930 -1.459 0.740 H15 5Y1 46
5Y1 H16 H16 H 0 1 N N N N N N 11.038 38.705 -16.533 0.892 -1.508 -0.022 H16 5Y1 47
5Y1 H17 H17 H 0 1 N N N N N N 14.713 40.559 -18.434 3.432 3.209 -1.174 H17 5Y1 48
5Y1 H18 H18 H 0 1 N N N N N N 10.808 41.665 -12.946 -2.863 0.011 0.663 H18 5Y1 49
5Y1 H19 H19 H 0 1 N N N N N N 10.543 38.754 -9.827 -6.849 -0.120 -0.872 H19 5Y1 50
5Y1 H20 H20 H 0 1 N N N N N N 12.949 39.035 -9.364 -6.965 2.338 -0.781 H20 5Y1 51
5Y1 H21 H21 H 0 1 N N N N N N 14.280 40.626 -10.691 -5.026 3.629 0.017 H21 5Y1 52
5Y1 H22 H22 H 0 1 N N N N N N 14.405 43.581 -14.782 -0.484 1.182 0.275 H22 5Y1 53
5Y1 H23 H23 H 0 1 N N N N N N 16.359 41.944 -17.880 4.194 4.137 0.887 H23 5Y1 54
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5Y1 O5 C23 DOUB N N 1
5Y1 O4 C22 SING N N 2
5Y1 C23 C22 SING N N 3
5Y1 C23 N3 SING N N 4
5Y1 C22 C10 SING N N 5
5Y1 N3 C11 DOUB N N 6
5Y1 O1 C1 DOUB N N 7
5Y1 C10 C1 SING N N 8
5Y1 C10 N2 DOUB N N 9
5Y1 C11 N2 SING N N 10
5Y1 C11 C12 SING N N 11
5Y1 C1 N1 SING N N 12
5Y1 C21 C12 DOUB Y N 13
5Y1 C21 C16 SING Y N 14
5Y1 C12 C13 SING Y N 15
5Y1 C17 O2 SING N N 16
5Y1 C17 C18 SING N N 17
5Y1 O2 C16 SING N N 18
5Y1 C16 C15 DOUB Y N 19
5Y1 C13 C14 DOUB Y N 20
5Y1 N1 C2 SING N N 21
5Y1 C18 C19 SING N N 22
5Y1 C15 C14 SING Y N 23
5Y1 C2 C3 SING N N 24
5Y1 C19 C20 SING N N 25
5Y1 C20 O3 SING N N 26
5Y1 C3 C4 SING N N 27
5Y1 C5 C4 DOUB Y N 28
5Y1 C5 C6 SING Y N 29
5Y1 C4 C9 SING Y N 30
5Y1 O3 C6 SING N N 31
5Y1 C6 C7 DOUB Y N 32
5Y1 C9 C8 DOUB Y N 33
5Y1 C7 C8 SING Y N 34
5Y1 C3 H1 SING N N 35
5Y1 C3 H2 SING N N 36
5Y1 C2 H3 SING N N 37
5Y1 C2 H4 SING N N 38
5Y1 C13 H5 SING N N 39
5Y1 C14 H6 SING N N 40
5Y1 C15 H7 SING N N 41
5Y1 C17 H8 SING N N 42
5Y1 C17 H9 SING N N 43
5Y1 C18 H10 SING N N 44
5Y1 C18 H11 SING N N 45
5Y1 C19 H12 SING N N 46
5Y1 C19 H13 SING N N 47
5Y1 C20 H14 SING N N 48
5Y1 C20 H15 SING N N 49
5Y1 C21 H16 SING N N 50
5Y1 C22 H17 SING N N 51
5Y1 C5 H18 SING N N 52
5Y1 C7 H19 SING N N 53
5Y1 C8 H20 SING N N 54
5Y1 C9 H21 SING N N 55
5Y1 N1 H22 SING N N 56
5Y1 O4 H23 SING N N 57
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5Y1 SMILES ACDLabs 12.01 O=C1NCCc2cc(ccc2)OCCCCOc2cccc(c2)C=2N=C1C(O)C(=O)N=2
5Y1 InChI InChI 1.03 InChI=1S/C23H23N3O5/c27-20-19-22(28)24-10-9-15-5-3-7-17(13-15)30-11-1-2-12-31-18-8-4-6-16(14-18)21(25-19)26-23(20)29/h3-8,13-14,20,27H,1-2,9-12H2,(H,24,28)
5Y1 InChIKey InChI 1.03 HUEWTLLMWLXBIR-UHFFFAOYSA-N
5Y1 SMILES_CANONICAL CACTVS 3.385 O[C@H]1C(=O)N=C2N=C1C(=O)NCCc3cccc(OCCCCOc4cccc2c4)c3
5Y1 SMILES CACTVS 3.385 O[CH]1C(=O)N=C2N=C1C(=O)NCCc3cccc(OCCCCOc4cccc2c4)c3
5Y1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1cc2cc(c1)OCCCCOc3cccc(c3)C4=NC(=O)C(C(=N4)C(=O)NCC2)O
5Y1 SMILES "OpenEye OEToolkits" 2.0.7 c1cc2cc(c1)OCCCCOc3cccc(c3)C4=NC(=O)C(C(=N4)C(=O)NCC2)O
#
_pdbx_chem_comp_identifier.comp_id 5Y1
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program ACDLabs
_pdbx_chem_comp_identifier.program_version 12.01
_pdbx_chem_comp_identifier.identifier
(5R)-5-hydroxy-16,21-dioxa-3,8,28-triazatetracyclo[20.3.1.1~2,6~.1~11,15~]octacosa-1(26),2,6(28),11(27),12,14,22,24-octaene-4,7-dione
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5Y1 'Create component' 2021-07-27 RCSB
5Y1 'Initial release' 2022-07-27 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
5Y1 C6 C 4.299 -2.014 1
5Y1 C4 C 5.598 0.236 2
5Y1 C3 C 5.598 1.736 3
5Y1 C2 C 6.659 2.797 4
5Y1 C1 C 9.407 3.159 5
5Y1 C10 C 10.706 2.409 6
5Y1 C11 C 12.005 0.159 7
5Y1 C12 C 12.005 -1.341 8
5Y1 C13 C 12.712 -2.669 9
5Y1 C14 C 11.958 -3.971 10
5Y1 C15 C 10.454 -4.017 11
5Y1 C16 C 9.621 -2.764 12
5Y1 C17 C 7.371 -4.063 13
5Y1 C18 C 6.311 -5.123 14
5Y1 C19 C 5.250 -4.063 15
5Y1 C20 C 3.750 -4.063 16
5Y1 C21 C 11.121 -2.764 17
5Y1 C22 C 12.005 3.159 18
5Y1 C23 C 13.304 2.409 19
5Y1 C5 C 4.299 -0.514 20
5Y1 C7 C 5.610 -2.791 21
5Y1 C8 C 6.932 -2.034 22
5Y1 C9 C 6.926 -0.510 23
5Y1 N1 N 8.108 2.409 24
5Y1 N2 N 10.706 0.908 25
5Y1 N3 N 13.304 0.908 26
5Y1 O1 O 9.407 4.659 27
5Y1 O2 O 8.871 -4.063 28
5Y1 O3 O 3.000 -2.764 29
5Y1 O4 O 12.005 4.659 30
5Y1 O5 O 14.603 3.159 31
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
5Y1 O5 C23 DOUBLE NONE 1
5Y1 C22 O4 SINGLE BEGINWEDGE 2
5Y1 C23 C22 SINGLE NONE 3
5Y1 C23 N3 SINGLE NONE 4
5Y1 C22 C10 SINGLE NONE 5
5Y1 N3 C11 DOUBLE NONE 6
5Y1 O1 C1 DOUBLE NONE 7
5Y1 C10 C1 SINGLE NONE 8
5Y1 C10 N2 DOUBLE NONE 9
5Y1 C11 N2 SINGLE NONE 10
5Y1 C11 C12 SINGLE NONE 11
5Y1 C1 N1 SINGLE NONE 12
5Y1 C21 C12 DOUBLE NONE 13
5Y1 C21 C16 SINGLE NONE 14
5Y1 C12 C13 SINGLE NONE 15
5Y1 C17 O2 SINGLE NONE 16
5Y1 C17 C18 SINGLE NONE 17
5Y1 O2 C16 SINGLE NONE 18
5Y1 C16 C15 DOUBLE NONE 19
5Y1 C13 C14 DOUBLE NONE 20
5Y1 N1 C2 SINGLE NONE 21
5Y1 C18 C19 SINGLE NONE 22
5Y1 C15 C14 SINGLE NONE 23
5Y1 C2 C3 SINGLE NONE 24
5Y1 C19 C20 SINGLE NONE 25
5Y1 C20 O3 SINGLE NONE 26
5Y1 C3 C4 SINGLE NONE 27
5Y1 C5 C4 SINGLE NONE 28
5Y1 C5 C6 DOUBLE NONE 29
5Y1 C4 C9 DOUBLE NONE 30
5Y1 O3 C6 SINGLE NONE 31
5Y1 C6 C7 SINGLE NONE 32
5Y1 C9 C8 SINGLE NONE 33
5Y1 C7 C8 DOUBLE NONE 34
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
5Y1 MurckoScaffold S1 scaffold O=C1CC2=NC(=N1)c1cccc(c1)OCCCCOc1cccc(c1)CCNC2=O InChI=1S/C23H23N3O4/c27-21-15-20-23(28)24-10-9-16-5-3-7-18(13-16)29-11-1-2-12-30-19-8-4-6-17(14-19)22(25-20)26-21/h3-8,13-14H,1-2,9-12,15H2,(H,24,28) HBXSVPIEUYIWRB-UHFFFAOYSA-N
5Y1 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
5Y1 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
5Y1 C6 S1 1
5Y1 C4 S1 1
5Y1 C3 S1 1
5Y1 C2 S1 1
5Y1 C1 S1 1
5Y1 C10 S1 1
5Y1 C11 S1 1
5Y1 C12 S1 1
5Y1 C13 S1 1
5Y1 C14 S1 1
5Y1 C15 S1 1
5Y1 C16 S1 1
5Y1 C17 S1 1
5Y1 C18 S1 1
5Y1 C19 S1 1
5Y1 C20 S1 1
5Y1 C21 S1 1
5Y1 C22 S1 1
5Y1 C23 S1 1
5Y1 C5 S1 1
5Y1 C7 S1 1
5Y1 C8 S1 1
5Y1 C9 S1 1
5Y1 N1 S1 1
5Y1 N2 S1 1
5Y1 N3 S1 1
5Y1 O1 S1 1
5Y1 O2 S1 1
5Y1 O3 S1 1
5Y1 O5 S1 1
5Y1 N1 F1 1
5Y1 C1 F1 1
5Y1 O1 F1 1
5Y1 C10 F1 1
5Y1 C6 F2 1
5Y1 C5 F2 1
5Y1 C4 F2 1
5Y1 C9 F2 1
5Y1 C8 F2 1
5Y1 C7 F2 1
5Y1 C12 F2 2
5Y1 C21 F2 2
5Y1 C16 F2 2
5Y1 C15 F2 2
5Y1 C14 F2 2
5Y1 C13 F2 2
#
_pdbe_chem_comp_rdkit_properties.comp_id 5Y1
_pdbe_chem_comp_rdkit_properties.exactmw 421.164
_pdbe_chem_comp_rdkit_properties.amw 421.453
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 1
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 31
_pdbe_chem_comp_rdkit_properties.NumAtoms 54
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.304
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 6
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 211.635
_pdbe_chem_comp_rdkit_properties.tpsa 109.580
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.651
_pdbe_chem_comp_rdkit_properties.CrippenMR 113.056
_pdbe_chem_comp_rdkit_properties.chi0v 14.883
_pdbe_chem_comp_rdkit_properties.chi1v 8.021
_pdbe_chem_comp_rdkit_properties.chi2v 3.274
_pdbe_chem_comp_rdkit_properties.chi3v 3.274
_pdbe_chem_comp_rdkit_properties.chi4v 2.008
_pdbe_chem_comp_rdkit_properties.chi0n 37.883
_pdbe_chem_comp_rdkit_properties.chi1n 19.376
_pdbe_chem_comp_rdkit_properties.chi2n 3.274
_pdbe_chem_comp_rdkit_properties.chi3n 3.274
_pdbe_chem_comp_rdkit_properties.chi4n 2.008
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.520
_pdbe_chem_comp_rdkit_properties.kappa1 6.737
_pdbe_chem_comp_rdkit_properties.kappa2 9.527
_pdbe_chem_comp_rdkit_properties.kappa3 5.155
_pdbe_chem_comp_rdkit_properties.Phi 2.070
#
_pdbe_chem_comp_external_mappings.comp_id 5Y1
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 164575856
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
5Y1 C6 3.841 1.662 1.045 ETKDGv3 1
5Y1 C4 3.362 -0.600 0.198 ETKDGv3 2
5Y1 C3 2.321 -1.636 -0.134 ETKDGv3 3
5Y1 C2 1.914 -2.437 1.116 ETKDGv3 4
5Y1 C1 -0.154 -3.585 0.190 ETKDGv3 5
5Y1 C10 -1.531 -3.318 -0.262 ETKDGv3 6
5Y1 C11 -3.262 -1.674 -0.631 ETKDGv3 7
5Y1 C12 -3.630 -0.241 -0.543 ETKDGv3 8
5Y1 C13 -5.032 0.200 -0.762 ETKDGv3 9
5Y1 C14 -5.350 1.498 -0.694 ETKDGv3 10
5Y1 C15 -4.308 2.507 -0.416 ETKDGv3 11
5Y1 C16 -3.036 2.134 -0.228 ETKDGv3 12
5Y1 C17 -0.673 2.836 0.139 ETKDGv3 13
5Y1 C18 0.119 4.140 0.248 ETKDGv3 14
5Y1 C19 1.637 3.891 0.256 ETKDGv3 15
5Y1 C20 2.153 3.443 1.631 ETKDGv3 16
5Y1 C21 -2.690 0.688 -0.279 ETKDGv3 17
5Y1 C22 -2.389 -4.425 -0.840 ETKDGv3 18
5Y1 C23 -3.732 -3.913 -1.292 ETKDGv3 19
5Y1 C5 2.930 0.737 0.677 ETKDGv3 20
5Y1 C7 5.279 1.329 0.955 ETKDGv3 21
5Y1 C8 5.673 0.123 0.527 ETKDGv3 22
5Y1 C9 4.672 -0.891 0.142 ETKDGv3 23
5Y1 N1 0.476 -2.686 1.112 ETKDGv3 24
5Y1 N2 -1.968 -2.098 -0.186 ETKDGv3 25
5Y1 N3 -4.083 -2.534 -1.148 ETKDGv3 26
5Y1 O1 0.475 -4.586 -0.247 ETKDGv3 27
5Y1 O2 -2.063 3.120 -0.003 ETKDGv3 28
5Y1 O3 3.486 2.936 1.525 ETKDGv3 29
5Y1 O4 -2.594 -5.416 0.133 ETKDGv3 30
5Y1 O5 -4.557 -4.709 -1.814 ETKDGv3 31
5Y1 H1 1.435 -1.119 -0.565 ETKDGv3 32
5Y1 H2 2.695 -2.331 -0.918 ETKDGv3 33
5Y1 H3 2.167 -1.873 2.042 ETKDGv3 34
5Y1 H4 2.469 -3.400 1.156 ETKDGv3 35
5Y1 H5 -5.808 -0.526 -0.970 ETKDGv3 36
5Y1 H6 -6.374 1.814 -0.850 ETKDGv3 37
5Y1 H7 -4.578 3.555 -0.382 ETKDGv3 38
5Y1 H8 -0.323 2.272 -0.754 ETKDGv3 39
5Y1 H9 -0.517 2.217 1.048 ETKDGv3 40
5Y1 H10 -0.128 4.773 -0.632 ETKDGv3 41
5Y1 H11 -0.187 4.695 1.162 ETKDGv3 42
5Y1 H12 1.900 3.143 -0.523 ETKDGv3 43
5Y1 H13 2.155 4.836 -0.017 ETKDGv3 44
5Y1 H14 1.494 2.688 2.107 ETKDGv3 45
5Y1 H15 2.167 4.324 2.306 ETKDGv3 46
5Y1 H16 -1.663 0.387 -0.121 ETKDGv3 47
5Y1 H17 -1.873 -4.852 -1.732 ETKDGv3 48
5Y1 H18 1.870 0.942 0.730 ETKDGv3 49
5Y1 H19 6.019 2.066 1.241 ETKDGv3 50
5Y1 H20 6.727 -0.114 0.469 ETKDGv3 51
5Y1 H21 5.007 -1.870 -0.178 ETKDGv3 52
5Y1 H22 -0.124 -2.091 1.728 ETKDGv3 53
5Y1 H23 -1.815 -6.030 0.092 ETKDGv3 54
#