Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 544

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 68


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N N N N N N 0 -2.665 -3.403 0.656
2 CA C CA S N N 0 -3.288 -2.261 0.048
3 CB C CB N N N 0 -3.13 -1.013 0.926
4 CG C CG N Y N 0 -1.688 -0.618 1.135
5 CD1 C CD1 N Y N 0 -0.991 -1.139 2.214
6 CD2 C CD2 N Y N 0 -1.088 0.258 0.245
7 CE1 C CE1 N Y N 0 0.341 -0.773 2.408
8 CE2 C CE2 N Y N 0 0.244 0.623 0.439
9 CZ C CZ N Y N 0 0.959 0.108 1.52
10 OH O OH N N N 0 2.258 0.466 1.71
11 C1A C C1A R N N 0 -2.668 -4.615 0.023
12 C1F C C1F N N N 0 -1.727 -5.573 0.13
13 C1B C C1B N N N 0 -3.856 -4.852 -0.875
14 C1H C C1H N Y N 0 0.704 -6.175 0.578
15 C1I C C1I N Y N 0 0.928 -6.385 -0.768
16 C1M C C1M N Y N 0 1.583 -6.62 1.546
17 C1J C C1J N Y N 0 2.079 -7.067 -1.163
18 C1K C C1K N Y N 0 2.981 -7.526 -0.204
19 C1L C C1L N Y N 0 2.733 -7.303 1.151
20 C1G C C1G N N N 0 -0.519 -5.449 0.998
21 O1G O O1G N N N 0 -0.512 -4.807 2.041
22 O3F O O3F N Y N 0 5.105 -3.153 0.87
23 C3G C C3G N Y N 0 4.911 -2.761 2.159
24 N3H N N3H N Y N 0 4.673 -1.48 2.329
25 C3C C C3C N Y N 0 4.717 -1.016 1.056
26 C3D C C3D N Y N 0 4.973 -1.997 0.161
27 C3E C C3E N N N 0 5.132 -2.083 -1.295
28 C3I C C3I N Y N 0 4.997 -3.809 3.137
29 C3N C C3N N Y N 0 4.424 -3.642 4.401
30 C3M C C3M N Y N 0 4.508 -4.661 5.35
31 C3L C C3L N Y N 0 5.164 -5.851 5.039
32 C3K C C3K N Y N 0 5.738 -6.023 3.779
33 C3J C C3J N Y N 0 5.655 -5.005 2.83
34 C3A C C3A N N N 0 3.021 0.781 0.546
35 C3B C C3B N N N 0 4.49 0.444 0.786
36 O2 O O2 N N N 0 -1.543 -2.202 -1.626
37 O1 O O1 N N N 0 -3.61 -1.525 -2.24
38 C C C N N N 0 -2.717 -1.998 -1.338
39 HN H HN N N N 0 -2.218 -3.363 1.539
40 HA1 H 1HA N N N 0 -4.343 -2.524 -0.086
41 HB1 H 1HB N N N 0 -3.655 -0.16 0.477
42 HB2 H 2HB N N N 0 -3.616 -1.171 1.899
43 HD11 H 1HD1 N N N 0 -1.464 -1.826 2.911
44 HD21 H 1HD2 N N N 0 -1.637 0.665 -0.6
45 HE11 H 1HE1 N N N 0 0.892 -1.178 3.252
46 HE21 H 1HE2 N N N 0 0.719 1.311 -0.256
47 H1F1 H 1H1F N N N 0 -1.842 -6.5 -0.425
48 H1B1 H 1H1B N N N 0 -3.817 -5.825 -1.376
49 H1B2 H 2H1B N N N 0 -3.905 -4.082 -1.652
50 H1B3 H 3H1B N N N 0 -4.784 -4.816 -0.293
51 H1L1 H 1H1L N N N 0 3.435 -7.66 1.898
52 H1I1 H 1H1I N N N 0 0.232 -6.031 -1.524
53 H1J1 H 1H1J N N N 0 2.271 -7.242 -2.217
54 H1K1 H 1H1K N N N 0 3.877 -8.058 -0.511
55 H1M1 H 1H1M N N N 0 1.399 -6.452 2.604
56 H3E1 H 1H3E N N N 0 5.931 -1.411 -1.657
57 H3E2 H 2H3E N N N 0 5.387 -3.106 -1.632
58 H3E3 H 3H3E N N N 0 4.205 -1.814 -1.837
59 H3N1 H 1H3N N N N 0 3.909 -2.72 4.658
60 H3M1 H 1H3M N N N 0 4.062 -4.526 6.331
61 H3L1 H 1H3L N N N 0 5.23 -6.645 5.778
62 H3K1 H 1H3K N N N 0 6.249 -6.951 3.537
63 H3J1 H 1H3J N N N 0 6.106 -5.155 1.852
64 H3A1 H 1H3A N N N 0 2.914 1.853 0.355
65 H3A2 H 2H3A N N N 0 2.611 0.229 -0.306
66 H3B1 H 1H3B N N N 0 4.871 1.037 1.628
67 H3B2 H 2H3B N N N 0 5.073 0.741 -0.095
68 HO11 H 1HO1 N N N 0 -3.244 -1.36 -3.134