Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 1C8

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 52


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O12 O O12 N N N 0 4.104 -2.819 0.541
2 C9 C C9 N N N 0 3.232 -2.039 0.22
3 N10 N N10 N N N 0 1.982 -2.483 -0.038
4 C11 C C11 N N N 0 1.687 -3.918 -0.059
5 C2 C C2 N Y N 0 0.975 -1.541 -0.284
6 C8 C C8 R N N 0 3.531 -0.566 0.11
7 C13 C C13 N N N 0 3.828 -0.217 -1.349
8 C14 C C14 N N N 0 5.072 -0.978 -1.813
9 N7 N N7 N N N 0 2.385 0.22 0.574
10 C15 C C15 N N N 0 2.608 1.656 0.354
11 C19 C C19 N N N 0 3.985 2.068 0.914
12 C18 C C18 N N N 0 3.747 3.48 1.504
13 C17 C C17 N N N 0 2.332 3.359 2.123
14 C16 C C16 N N N 0 1.557 2.476 1.123
15 C3 C C3 N Y N 0 1.198 -0.189 -0.004
16 N4 N N4 N Y N 0 0.237 0.688 -0.271
17 C5 C C5 N Y N 0 -0.917 0.284 -0.778
18 N6 N N6 N Y N 0 -1.163 -0.989 -1.038
19 C1 C C1 N Y N 0 -0.248 -1.922 -0.808
20 N20 N N20 N Y N 0 -1.905 1.231 -1.046
21 C24 C C24 N Y N 0 -1.745 2.408 -1.739
22 C23 C C23 N Y N 0 -2.946 3.016 -1.764
23 N22 N N22 N Y N 0 -3.827 2.247 -1.111
24 C21 C C21 N Y N 0 -3.221 1.164 -0.676
25 C25 C C25 N Y N 0 -3.851 0.066 0.086
26 C29 C C29 N Y N 0 -5.18 0.002 0.322
27 S28 S S28 N Y N 0 -5.492 -1.458 1.257
28 C27 C C27 N Y N 0 -3.826 -1.841 1.242
29 N26 N N26 N Y N 0 -3.163 -0.949 0.594
30 H1 H H1 N N N 0 1.831 -4.304 -1.068
31 H2 H H2 N N N 0 2.356 -4.437 0.627
32 H3 H H3 N N N 0 0.654 -4.081 0.248
33 H4 H H4 N N N 0 4.402 -0.328 0.721
34 H5 H H5 N N N 0 2.978 -0.497 -1.97
35 H6 H H6 N N N 0 4.005 0.855 -1.437
36 H7 H H7 N N N 0 5.34 -0.658 -2.82
37 H8 H H8 N N N 0 5.899 -0.772 -1.133
38 H9 H H9 N N N 0 4.863 -2.048 -1.816
39 H10 H H10 N N N 0 2.553 1.883 -0.711
40 H11 H H11 N N N 0 4.302 1.377 1.694
41 H12 H H12 N N N 0 4.725 2.109 0.114
42 H13 H H13 N N N 0 4.487 3.707 2.272
43 H14 H H14 N N N 0 3.761 4.235 0.718
44 H15 H H15 N N N 0 2.383 2.875 3.098
45 H16 H H16 N N N 0 1.867 4.341 2.206
46 H17 H H17 N N N 0 0.993 3.102 0.431
47 H18 H H18 N N N 0 0.882 1.809 1.659
48 H19 H H19 N N N 0 -0.454 -2.96 -1.024
49 H20 H H20 N N N 0 -0.83 2.775 -2.178
50 H21 H H21 N N N 0 -3.163 3.965 -2.233
51 H22 H H22 N N N 0 -5.919 0.719 -0.003
52 H23 H H23 N N N 0 -3.391 -2.713 1.708