Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : 01P

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 56


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 1.829 -3.509 0.817
2 N1 N N1 N N N 0 -5.475 0.383 -0.453
3 O1 O O1 N N N 0 -8.109 -0.432 0.082
4 C2 C C2 N N N 0 -7.574 0.706 0.763
5 N2 N N2 N N N 0 3.988 -2.517 0.379
6 O2 O O2 N N N 0 -3.949 2.556 0.356
7 C3 C C3 N N N 0 -6.056 0.553 0.887
8 N3 N N3 N Y N 0 6.715 -0.472 -0.873
9 C4 C C4 N Y N 0 0.682 -1.178 0.151
10 N4 N N4 N Y N 0 -0.08 -2.198 0.516
11 C5 C C5 N N N 0 -6.047 -0.794 -1.123
12 N5 N N5 N Y N 0 2.002 -1.277 0.106
13 C6 C C6 N N N 0 -7.566 -0.628 -1.227
14 N6 N N6 N N N 0 0.083 0.023 -0.191
15 C7 C C7 N Y N 0 4.798 2.269 0.613
16 C8 C C8 N Y N 0 5.612 3.315 0.303
17 C9 C C9 N Y N 0 6.798 3.113 -0.4
18 C10 C C10 N Y N 0 7.177 1.868 -0.797
19 C11 C C11 N Y N 0 -2.063 -0.98 -0.662
20 C12 C C12 N Y N 0 -1.314 0.116 -0.256
21 C13 C C13 N Y N 0 -1.947 1.304 0.086
22 C14 C C14 N Y N 0 -3.327 1.394 0.021
23 C15 C C15 N Y N 0 -4.077 0.294 -0.387
24 C16 C C16 N Y N 0 -3.441 -0.891 -0.728
25 C17 C C17 N N N 0 -3.117 3.643 0.766
26 C18 C C18 N Y N 0 4.762 -1.386 0.103
27 C19 C C19 N Y N 0 4.343 -0.137 0.522
28 C20 C C20 N Y N 0 5.158 0.969 0.22
29 C21 C C21 N Y N 0 6.364 0.761 -0.495
30 C22 C C22 N Y N 0 5.967 -1.512 -0.6
31 C23 C C23 N Y N 0 0.457 -3.363 0.851
32 C24 C C24 N Y N 0 2.607 -2.416 0.428
33 H1 H H1 N N N 0 2.292 -4.447 1.089
34 H2 H H2 N N N 0 -7.804 1.61 0.198
35 H2A H H2A N N N 0 -8.015 0.775 1.758
36 HN2 H HN2 N N N 0 4.418 -3.372 0.536
37 H3 H H3 N N N 0 -5.827 -0.32 1.497
38 H3A H H3A N N N 0 -5.637 1.444 1.354
39 H5 H H5 N N N 0 -5.622 -0.886 -2.123
40 H5A H H5A N N N 0 -5.818 -1.689 -0.545
41 H6 H H6 N N N 0 -8.0 -1.523 -1.671
42 H6A H H6A N N N 0 -7.796 0.237 -1.849
43 HN6 H HN6 N N N 0 0.63 0.8 -0.385
44 H7 H H7 N N N 0 3.881 2.437 1.158
45 H8 H H8 N N N 0 5.335 4.314 0.605
46 H9 H H9 N N N 0 7.427 3.96 -0.635
47 H10 H H10 N N N 0 8.1 1.73 -1.341
48 H11 H H11 N N N 0 -1.569 -1.901 -0.932
49 H13 H H13 N N N 0 -1.364 2.155 0.402
50 H16 H H16 N N N 0 -4.023 -1.744 -1.044
51 H17 H H17 N N N 0 -3.738 4.507 1.004
52 H17A H H17A N N N 0 -2.547 3.352 1.648
53 H17B H H17B N N N 0 -2.431 3.9 -0.042
54 H19 H H19 N N N 0 3.418 -0.015 1.065
55 H22 H H22 N N N 0 6.288 -2.491 -0.924
56 H23 H H23 N N N 0 -0.173 -4.189 1.147