Sample Instance

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{
    "data": {
        "type": "samples",
        "id": "SRS498330",
        "attributes": {
            "latitude": 32.2806,
            "longitude": -110.9416,
            "sample-metadata": [
                {
                    "key": "submitted to insdc",
                    "value": "SRA",
                    "unit": null
                },
                {
                    "key": "investigation type",
                    "value": "metagenome",
                    "unit": null
                },
                {
                    "key": "project name",
                    "value": "Microbial communtiy structure in mine tailings undergoing phytostabilization: a mesocosm study",
                    "unit": null
                },
                {
                    "key": "geographic location (longitude)",
                    "value": "-110.941605",
                    "unit": null
                },
                {
                    "key": "geographic location (country and/or sea,region)",
                    "value": "Tucson, AZ",
                    "unit": null
                },
                {
                    "key": "collection date",
                    "value": "12/1/11",
                    "unit": null
                },
                {
                    "key": "environment (biome)",
                    "value": "Greenhouse-Mesocosm",
                    "unit": null
                },
                {
                    "key": "environment (feature)",
                    "value": "Metalliferous mine tailings",
                    "unit": null
                },
                {
                    "key": "environment (material)",
                    "value": "mine tailings amended with 15% w/w compost",
                    "unit": null
                },
                {
                    "key": "environmental package",
                    "value": "MIMS.me;MIGS/MIMS/MIMARKS.miscellaneous",
                    "unit": null
                },
                {
                    "key": "nucleic acid extraction",
                    "value": "http://images.www.mpbio.com/docs/fastprep/FastDNASpinKitforsoil.pdf",
                    "unit": null
                },
                {
                    "key": "nucleic acid amplification",
                    "value": "http://www.earthmicrobiome.org/emp-standard-protocols/16s/",
                    "unit": null
                },
                {
                    "key": "multiplex identifiers",
                    "value": "CCGACATTGTAG",
                    "unit": null
                },
                {
                    "key": "sequencing method",
                    "value": "Illumina HiSeq iTags",
                    "unit": null
                },
                {
                    "key": "assembly",
                    "value": "none",
                    "unit": null
                },
                {
                    "key": "relevant standard operating procedures",
                    "value": "http://www.earthmicrobiome.org/emp-standard-protocols/16s-taxonomic-assignments/",
                    "unit": null
                },
                {
                    "key": "pH",
                    "value": "3.43",
                    "unit": null
                },
                {
                    "key": "geographic location (latitude)",
                    "value": "32.280555",
                    "unit": null
                },
                {
                    "key": "NCBI sample classification",
                    "value": "410658",
                    "unit": null
                },
                {
                    "key": "instrument model",
                    "value": "Illumina HiSeq 2000",
                    "unit": null
                },
                {
                    "key": "sample collection device",
                    "value": "Core sampler",
                    "unit": null
                }
            ],
            "biosample": "SAMN02388165",
            "accession": "SRS498330",
            "analysis-completed": "2016-05-09",
            "collection-date": null,
            "geo-loc-name": null,
            "sample-desc": "Mine tailings, unseeded, compost-amended control",
            "environment-biome": "Greenhouse-Mesocosm",
            "environment-feature": null,
            "environment-material": null,
            "sample-name": "TC-3-12",
            "sample-alias": "TC-3-12",
            "host-tax-id": null,
            "species": null,
            "last-update": "2024-01-23T11:46:06"
        },
        "relationships": {
            "biome": {
                "data": {
                    "type": "biomes",
                    "id": "root:Host-associated:Plants:Rhizosphere:Soil"
                },
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Host-associated:Plants:Rhizosphere:Soil?format=api"
                }
            },
            "studies": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/SRS498330/studies?format=api"
                },
                "data": [
                    {
                        "type": "studies",
                        "id": "MGYS00000867",
                        "links": {
                            "self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00000867?format=api"
                        }
                    }
                ]
            },
            "runs": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/SRS498330/runs?format=api"
                }
            }
        },
        "links": {
            "self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/SRS498330?format=api"
        }
    }
}