Sample Instance

HTTP 200 OK
Allow: GET, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "data": {
        "type": "samples",
        "id": "SRS386929",
        "attributes": {
            "latitude": null,
            "longitude": null,
            "sample-metadata": [
                {
                    "key": "NCBI sample classification",
                    "value": "410658",
                    "unit": null
                },
                {
                    "key": "instrument model",
                    "value": "454 GS FLX Titanium",
                    "unit": null
                }
            ],
            "biosample": "SAMN01893943",
            "accession": "SRS386929",
            "analysis-completed": "2016-04-14",
            "collection-date": null,
            "geo-loc-name": null,
            "sample-desc": "Anguil sampling site (-36° 35' 31.56\", -63° 57' 31.05\") is located in an area with entic haplustolls soils. Mean annual precipitation and temperature are 760 mm and 15.3 ºC. Sampling was performed on September 2011 and wheat was recently planted in all plots under agricultural management. Three different plots under conventional tillage (CT) for the last 60 years and three different areas within one 12 ha plot under no-till farming (NT) during 4 years and more that 15 years under agricultural treatment were sampled. In addition, two plots covered by weeping lovegrass (Eragrostis curvula) for the last 60 years and one other plot covered by herbaceous non-woody plants typical from the area were sampled as No Agriculture (NA) control. Bulk soils were obtained with an auger from the upper 20 cm soil layer, from 20 randomly selected spots within an area of ~500 m2 for each plot. Replicates for each plot were then pooled together and sent to the lab for further processing. Soil samples were stored at -80*C until processing. Total DNA was obtained from all bulk samples using PowerSoil DNA isolation kit from MoBio. Pyrotags were generated by 16S rDNA V4 region amplification using F563-R802 primers developed by Ribosomal Database Project.",
            "environment-biome": null,
            "environment-feature": null,
            "environment-material": null,
            "sample-name": "Argentina Anguil Bulk Soil: All amplicon samples from 16S rDNA",
            "sample-alias": "Anguil Bulk 16S Amplicons",
            "host-tax-id": null,
            "species": null,
            "last-update": "2016-04-14T10:00:10"
        },
        "relationships": {
            "biome": {
                "data": {
                    "type": "biomes",
                    "id": "root:Environmental:Terrestrial:Soil"
                },
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Terrestrial:Soil?format=api"
                }
            },
            "studies": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/SRS386929/studies?format=api"
                },
                "data": [
                    {
                        "type": "studies",
                        "id": "MGYS00000666",
                        "links": {
                            "self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00000666?format=api"
                        }
                    }
                ]
            },
            "runs": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/SRS386929/runs?format=api"
                }
            }
        },
        "links": {
            "self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/SRS386929?format=api"
        }
    }
}