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{
"data": {
"type": "samples",
"id": "SRS011748",
"attributes": {
"longitude": 0.232,
"biosample": "SAMN00011638",
"latitude": 38.0685,
"sample-metadata": [
{
"key": "sample storage temperature",
"value": "-20",
"unit": "°C"
},
{
"key": "temperature",
"value": "15.9",
"unit": "°C"
},
{
"key": "total organic carbon",
"value": "28.9",
"unit": "mg/L"
},
{
"key": "project name",
"value": "MedDCM-OCT",
"unit": null
},
{
"key": "collection date",
"value": "15 Oct 2007",
"unit": null
},
{
"key": "environment (biome)",
"value": "marine biome ENVO:00000447",
"unit": null
},
{
"key": "environment (feature)",
"value": "marine habitat ENVO:00000569",
"unit": null
},
{
"key": "environment (material)",
"value": "sea water ENVO:00002149",
"unit": null
},
{
"key": "sample collection device or method",
"value": "Niskin bottle",
"unit": null
},
{
"key": "sample material processing",
"value": "filtered through a 5 µm pore size polycarbonate filter and 0.22 µm pore size Sterivex filters (keeping 0.2-5 µm fraction)",
"unit": null
},
{
"key": "amount or size of sample collected",
"value": "30",
"unit": "L"
},
{
"key": "nucleic acid extraction",
"value": "doi:10.1371/journal.pone.0000914",
"unit": null
},
{
"key": "chlorophyll",
"value": "3.48",
"unit": "µmol/L"
},
{
"key": "depth",
"value": "50",
"unit": "m"
},
{
"key": "dissolved organic carbon",
"value": "21.1",
"unit": "mg/L"
},
{
"key": "dissolved oxygen",
"value": "6.8",
"unit": "mg/L"
},
{
"key": "salinity",
"value": "38.6",
"unit": "practical salinity units"
},
{
"key": "total depth of water column",
"value": "200",
"unit": "m"
},
{
"key": "alt id - submitted sample id",
"value": "mature Mediterranean DCM community",
"unit": null
},
{
"key": "GOLD sample classification",
"value": "Environmental > Aquatic > Marine > Oceanic > Uncharacterized",
"unit": null
},
{
"key": "NCBI sample classification",
"value": "408172",
"unit": null
},
{
"key": "instrument model",
"value": "454 GS FLX",
"unit": null
}
],
"accession": "SRS011748",
"analysis-completed": "2011-05-23",
"collection-date": "2007-10-15",
"geo-loc-name": "Spain; Alicante",
"sample-desc": "Seawater was collected from the DCM layer (50 m deep) off the coast of Alicante, Spain with a Niskin bottle on October 15, 2007. Total DNA was isolated from the pico-planktonic 5-0.2 micrometer size fraction. A fosmid library was created from this DNA (ca. 13000 fosmids) and a part of the DNA from this sample was also sequenced using directly pyrosequencing.",
"environment-biome": "marine biome ",
"environment-feature": "marine habitat",
"environment-material": "sea water",
"sample-name": "mature Mediterranean DCM community",
"sample-alias": "mature Mediterranean DCM community",
"host-tax-id": null,
"species": null,
"last-update": "2015-08-13T15:30:55"
},
"relationships": {
"biome": {
"data": {
"type": "biomes",
"id": "root:Environmental:Aquatic:Marine:Oceanic"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Marine:Oceanic?format=api"
}
},
"studies": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/SRS011748/studies?format=api"
},
"data": [
{
"type": "studies",
"id": "MGYS00000275",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00000275?format=api"
}
}
]
},
"runs": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/SRS011748/runs?format=api"
}
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/SRS011748?format=api"
}
}
}