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{
"data": {
"type": "samples",
"id": "ERS846413",
"attributes": {
"latitude": 62.7179,
"longitude": 29.0618,
"sample-metadata": [
{
"key": "investigation type",
"value": "mimarks-survey",
"unit": null
},
{
"key": "project name",
"value": "Outo_fract",
"unit": null
},
{
"key": "geographic location (depth)",
"value": "1820",
"unit": "m"
},
{
"key": "collection date",
"value": "2011-08-18",
"unit": null
},
{
"key": "source material identifiers",
"value": "Outokumpu fract 1820mDNA",
"unit": null
},
{
"key": "sample collection device or method",
"value": "slow cont pumping",
"unit": null
},
{
"key": "sample material processing",
"value": "filtration",
"unit": null
},
{
"key": "amount or size of sample collected",
"value": "1",
"unit": "L"
},
{
"key": "nucleic acid extraction",
"value": "commercial kit",
"unit": null
},
{
"key": "nucleic acid amplification",
"value": "PCR",
"unit": null
},
{
"key": "target gene",
"value": "methyl coenzyme M reductase",
"unit": null
},
{
"key": "target subfragment",
"value": "alpha subunit",
"unit": null
},
{
"key": "pcr primers",
"value": "ME1, ME3",
"unit": null
},
{
"key": "multiplex identifiers",
"value": "TGAGCA",
"unit": null
},
{
"key": "adapters",
"value": "GCMATGCARATHGGWATGTC",
"unit": null
},
{
"key": "sequencing method",
"value": "pyrosequencing",
"unit": null
},
{
"key": "alkalinity",
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"unit": "mEq/L"
},
{
"key": "calcium",
"value": "11800",
"unit": "mg/L"
},
{
"key": "chloride",
"value": "30300",
"unit": "mg/L"
},
{
"key": "dissolved inorganic carbon",
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"unit": "µg/L"
},
{
"key": "dissolved organic carbon",
"value": "30",
"unit": "µmol/L"
},
{
"key": "magnesium",
"value": "15.1",
"unit": "mg/L"
},
{
"key": "oxygenation status of sample",
"value": "anaerobic",
"unit": null
},
{
"key": "pH",
"value": "9",
"unit": null
},
{
"key": "NCBI sample classification",
"value": "198240",
"unit": null
},
{
"key": "instrument model",
"value": "454 GS FLX Titanium",
"unit": null
},
{
"key": "ENA checklist",
"value": "GSC MIxS water (ERC000024)",
"unit": null
},
{
"key": "geographic location (region and locality)",
"value": "Outokumpu",
"unit": null
},
{
"key": "conductivity",
"value": "6930",
"unit": "mS/cm"
},
{
"key": "sample volume or weight for DNA extraction",
"value": "1000",
"unit": "mL"
},
{
"key": "water environmental package",
"value": "water",
"unit": null
}
],
"biosample": "SAMEA3539264",
"accession": "ERS846413",
"analysis-completed": "2017-03-21",
"collection-date": null,
"geo-loc-name": "Finland",
"sample-desc": "groundwater",
"environment-biome": "deep subsurface",
"environment-feature": "crystalline bedrock",
"environment-material": "groundwater",
"sample-name": "Outokumpu fract 1820mDNA",
"sample-alias": "OutoVIImDNA",
"host-tax-id": null,
"species": null,
"last-update": "2017-03-21T12:02:29"
},
"relationships": {
"biome": {
"data": {
"type": "biomes",
"id": "root:Environmental:Terrestrial:Rock-dwelling (subaerial biofilm)"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Terrestrial:Rock-dwelling%20(subaerial%20biofilm)?format=api"
}
},
"studies": {
"links": {
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},
"data": [
{
"type": "studies",
"id": "MGYS00001619",
"links": {
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}
}
]
},
"runs": {
"links": {
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}
}
},
"links": {
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}
}
}