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{
"data": {
"type": "samples",
"id": "ERS758425",
"attributes": {
"biosample": "SAMEA3462816",
"longitude": 8.4342,
"sample-metadata": [
{
"key": "silicate",
"value": "0.63",
"unit": "µmol/L"
},
{
"key": "temperature",
"value": "19.983",
"unit": "\\'||chr(38)||\\'deg;C"
},
{
"key": "investigation type",
"value": "mimarks-survey",
"unit": null
},
{
"key": "project name",
"value": "PRJEB9624",
"unit": null
},
{
"key": "geographic location (depth)",
"value": "0.5",
"unit": "m"
},
{
"key": "collection date",
"value": "2012-08-15",
"unit": null
},
{
"key": "target gene",
"value": "16s rRNA",
"unit": null
},
{
"key": "target subfragment",
"value": "V1-V2",
"unit": null
},
{
"key": "pcr primers",
"value": "27f-338r,27F: TCAGAGTTTGATCMTGGCTCAG + 338r: CATGCTGCCTCCCGTAGGAGT",
"unit": null
},
{
"key": "multiplex identifiers",
"value": "f: ACCAGTTG; r: ACAGCTCA",
"unit": null
},
{
"key": "pcr conditions",
"value": "initial denaturation:98degC_30s; denaturation:98degC_9s;annealing:55degC_1min; elongation:72degC_90s; final elongation:72degC_10min; 30 cycles",
"unit": null
},
{
"key": "sequencing method",
"value": "Sequencing by synthesis, Illumina paired-end",
"unit": null
},
{
"key": "ammonium",
"value": "0.824",
"unit": "µM/L"
},
{
"key": "chlorophyll",
"value": "4.3",
"unit": "µg/L"
},
{
"key": "dissolved organic nitrogen",
"value": "22.0354",
"unit": "µg/L"
},
{
"key": "nitrate",
"value": "0.06",
"unit": "µmol/L"
},
{
"key": "nitrite",
"value": "0.009",
"unit": "µmol/L"
},
{
"key": "pH",
"value": "8.16",
"unit": null
},
{
"key": "phosphate",
"value": "0.18",
"unit": "µmol/L"
},
{
"key": "salinity",
"value": "29.76609269",
"unit": "psu"
},
{
"key": "suspended particulate matter",
"value": "1.2",
"unit": "mg/L"
},
{
"key": "total dissolved nitrogen",
"value": "22.68",
"unit": "µg/L"
},
{
"key": "NCBI sample classification",
"value": "1561972",
"unit": null
},
{
"key": "instrument model",
"value": "Illumina MiSeq",
"unit": null
},
{
"key": "ENA checklist",
"value": "GSC MIxS water (ERC000024)",
"unit": null
},
{
"key": "sample volume or weight for DNA extraction",
"value": "100",
"unit": "mL"
},
{
"key": "water environmental package",
"value": "water",
"unit": null
}
],
"latitude": 55.0292,
"accession": "ERS758425",
"analysis-completed": "2017-03-21",
"collection-date": null,
"geo-loc-name": "North Sea",
"sample-desc": "seawater sample taken near the oyster reef at low tide; temperature and salinity measured at a nearby site by ship Mya IIl",
"environment-biome": "aquatic, marine, benthic, coastal",
"environment-feature": "oyster reef",
"environment-material": "environmental material, water, seawater",
"sample-name": "Seawater sample Sylt, 2012-08-15",
"sample-alias": "SW_Sylt_20120815",
"host-tax-id": 29159,
"species": "Crassostrea gigas",
"last-update": "2017-03-21T11:44:24"
},
"relationships": {
"biome": {
"data": {
"type": "biomes",
"id": "root:Host-associated:Mollusca:Digestive system"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Host-associated:Mollusca:Digestive%20system?format=api"
}
},
"studies": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS758425/studies?format=api"
},
"data": [
{
"type": "studies",
"id": "MGYS00001607",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00001607?format=api"
}
}
]
},
"runs": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS758425/runs?format=api"
}
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS758425?format=api"
}
}
}