Sample Instance

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{
    "data": {
        "type": "samples",
        "id": "ERS672496",
        "attributes": {
            "latitude": 22.92,
            "longitude": 73.2,
            "biosample": "SAMEA3299992",
            "sample-metadata": [
                {
                    "key": "investigation type",
                    "value": "metagenome",
                    "unit": null
                },
                {
                    "key": "project name",
                    "value": "Metagenomic exploration of Lasundra hot spring",
                    "unit": null
                },
                {
                    "key": "geographic location (depth)",
                    "value": "8",
                    "unit": "m"
                },
                {
                    "key": "collection date",
                    "value": "2014-10-16",
                    "unit": null
                },
                {
                    "key": "environmental package",
                    "value": "water",
                    "unit": null
                },
                {
                    "key": "sequencing method",
                    "value": "Ion torrent PGM platform",
                    "unit": null
                },
                {
                    "key": "NCBI sample classification",
                    "value": "433727",
                    "unit": null
                },
                {
                    "key": "instrument model",
                    "value": "Ion Torrent PGM",
                    "unit": null
                },
                {
                    "key": "ENA checklist",
                    "value": "GSC MIxS water (ERC000024)",
                    "unit": null
                }
            ],
            "accession": "ERS672496",
            "analysis-completed": "2015-03-31",
            "collection-date": "2014-10-16",
            "geo-loc-name": "India",
            "sample-desc": "Geothermal areas are the main permanent hot places of the world, and these areas are the major habitats of thermophilic bacteria. In culture independent method, metagenome was isolated using manual and kit based methods. The short gun sequencing of metagenome was performed using Ion torrent PGM platform. The analysis of sequencing data revealed that this spring is dominated by bacterial taxa. MG-RAST based community analysis showed that bacteria were found in dominancy with 99.2% in domain hit distribution. Firmicutes were found to be dominant in domain hit classification followed by proteobacteria. Moreover, unclassified sequences also found in this metagenome indicate there are possibilities of getting novel organisms.",
            "environment-biome": "high temperature habitat",
            "environment-feature": "hot spring",
            "environment-material": "water",
            "sample-name": "BAM-LASUNDRA",
            "sample-alias": "Hot spring microbial communities from Lasundra 11",
            "host-tax-id": null,
            "species": null,
            "last-update": "2015-08-13T15:31:02"
        },
        "relationships": {
            "biome": {
                "data": {
                    "type": "biomes",
                    "id": "root:Environmental:Aquatic:Thermal springs"
                },
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Thermal%20springs?format=api"
                }
            },
            "runs": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS672496/runs?format=api"
                }
            },
            "studies": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS672496/studies?format=api"
                },
                "data": [
                    {
                        "type": "studies",
                        "id": "MGYS00000466",
                        "links": {
                            "self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00000466?format=api"
                        }
                    }
                ]
            }
        },
        "links": {
            "self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS672496?format=api"
        }
    }
}