HTTP 200 OK
Allow: GET, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept
{
"data": {
"type": "samples",
"id": "ERS509940",
"attributes": {
"longitude": 9.8018,
"biosample": "SAMEA2660738",
"latitude": 52.3855,
"sample-metadata": [
{
"key": "investigation type",
"value": "mimarks-survey",
"unit": null
},
{
"key": "project name",
"value": "TRIF signalling drives homeostatic intestinal epithelial antimicrobial peptide expression",
"unit": null
},
{
"key": "geographic location (longitude)",
"value": "9.80182171",
"unit": null
},
{
"key": "geographic location (country and/or sea,region)",
"value": "Germany",
"unit": null
},
{
"key": "collection date",
"value": "2010",
"unit": null
},
{
"key": "environment (biome)",
"value": "Animal facility",
"unit": null
},
{
"key": "environment (feature)",
"value": "specific pathogen-free",
"unit": null
},
{
"key": "environment (material)",
"value": "air",
"unit": null
},
{
"key": "environmental package",
"value": "host-associated",
"unit": null
},
{
"key": "target gene",
"value": "16S rDNA",
"unit": null
},
{
"key": "target subfragment",
"value": "V1 - V3",
"unit": null
},
{
"key": "pcr primers",
"value": "8F (5'-AGAGTTTGATCCTGGCTCAG-3'), 541R (5'-WTTACCGCGGCTGCTGG-3'); sequencing primer: 541R",
"unit": null
},
{
"key": "multiplex identifiers",
"value": "ATATCGCGAG",
"unit": null
},
{
"key": "adapters",
"value": "TCAG",
"unit": null
},
{
"key": "sequencing method",
"value": "pyrosequencing",
"unit": null
},
{
"key": "body site",
"value": "distal small intestine",
"unit": null
},
{
"key": "host common name",
"value": "house mouse",
"unit": null
},
{
"key": "host taxid",
"value": "10090",
"unit": null
},
{
"key": "geographic location (latitude)",
"value": "52.38547512",
"unit": null
},
{
"key": "NCBI sample classification",
"value": "410661",
"unit": null
},
{
"key": "instrument model",
"value": "454 GS FLX",
"unit": null
},
{
"key": "ENA checklist",
"value": "ERC000013",
"unit": null
},
{
"key": "host age",
"value": "6",
"unit": "weeks"
},
{
"key": "host body habitat",
"value": "distal small intestine",
"unit": null
},
{
"key": "host body site",
"value": "distal small intestine",
"unit": null
},
{
"key": "host family relationship",
"value": "Litter A",
"unit": null
},
{
"key": "host genotype",
"value": "C57BL/6 wt/wt",
"unit": null
},
{
"key": "host infra-specific name",
"value": "C57BL/6",
"unit": null
},
{
"key": "host sex",
"value": "female",
"unit": null
},
{
"key": "host scientific name",
"value": "Mus musculus",
"unit": null
}
],
"accession": "ERS509940",
"analysis-completed": "2016-09-21",
"collection-date": null,
"geo-loc-name": "Germany",
"sample-desc": "intestinal microbiota of mouse TRIF_M4_wt, distal small intestine sample",
"environment-biome": "Animal facility",
"environment-feature": "specific pathogen-free",
"environment-material": "air",
"sample-name": "TRIF_M4_wt_SI_dist_3_wdh",
"sample-alias": "TRIF_M4_wt_SI_dist_3_wdh",
"host-tax-id": 10090,
"species": null,
"last-update": "2024-04-15T16:53:26"
},
"relationships": {
"biome": {
"data": {
"type": "biomes",
"id": "root:Host-associated:Mammals:Digestive system:Large intestine"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Host-associated:Mammals:Digestive%20system:Large%20intestine?format=api"
}
},
"studies": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS509940/studies?format=api"
},
"data": [
{
"type": "studies",
"id": "MGYS00001224",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00001224?format=api"
}
}
]
},
"runs": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS509940/runs?format=api"
}
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS509940?format=api"
}
}
}