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{
"data": {
"type": "samples",
"id": "ERS3356344",
"attributes": {
"latitude": null,
"longitude": null,
"sample-metadata": [
{
"key": "investigation type",
"value": "metagenome",
"unit": null
},
{
"key": "project name",
"value": "Dynamics of the Lung Microbiome in Patients with Cystic Fibrosis",
"unit": null
},
{
"key": "geographic location (country and/or sea,region)",
"value": "Switzerland",
"unit": null
},
{
"key": "collection date",
"value": "2015-02-17",
"unit": null
},
{
"key": "environment (biome)",
"value": "lung",
"unit": null
},
{
"key": "environment (feature)",
"value": "lung",
"unit": null
},
{
"key": "environment (material)",
"value": "sputum",
"unit": null
},
{
"key": "environmental package",
"value": "human-associated",
"unit": null
},
{
"key": "sequencing method",
"value": "Illumina HiSeq 4000",
"unit": null
},
{
"key": "instrument model",
"value": "Illumina HiSeq 4000",
"unit": null
},
{
"key": "ENA checklist",
"value": "ERC000014",
"unit": null
},
{
"key": "last update date",
"value": "2019-04-05",
"unit": null
}
],
"biosample": "SAMEA5554302",
"accession": "ERS3356344",
"analysis-completed": "2019-05-02",
"collection-date": "2015-02-17",
"geo-loc-name": "Switzerland",
"sample-desc": "DNA from lung sputum has been isolated and depleted of methylated DNA to enrich for the non-human fraction. Paired-end sequencing was carried out using Illumina HiSeq 4000. Reads were then mapped to the human reference genome (assembly hg38) using BowTie2. Reads mapping to the human genome were discarded from further analysis.",
"environment-biome": "lung",
"environment-feature": "lung",
"environment-material": "sputum",
"sample-name": "419",
"sample-alias": "419",
"host-tax-id": 9606,
"species": "Homo sapiens",
"last-update": "2019-05-02T15:45:44"
},
"relationships": {
"biome": {
"data": {
"type": "biomes",
"id": "root:Host-associated:Human:Respiratory system:Pulmonary system:Lung"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Host-associated:Human:Respiratory%20system:Pulmonary%20system:Lung?format=api"
}
},
"studies": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS3356344/studies?format=api"
},
"data": [
{
"type": "studies",
"id": "MGYS00004708",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00004708?format=api"
}
}
]
},
"runs": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS3356344/runs?format=api"
}
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS3356344?format=api"
}
}
}