HTTP 200 OK
Allow: GET, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept
{
"data": {
"type": "samples",
"id": "ERS187675",
"attributes": {
"sample-metadata": [
{
"key": "sample storage temperature",
"value": "-20",
"unit": null
},
{
"key": "temperature",
"value": "13.0",
"unit": null
},
{
"key": "investigation type",
"value": "mimarks-survey",
"unit": null
},
{
"key": "project name",
"value": "Biodiversity Patterns in Amvrakikos",
"unit": null
},
{
"key": "geographic location (longitude)",
"value": "20.775639",
"unit": null
},
{
"key": "geographic location (depth)",
"value": "1.5",
"unit": null
},
{
"key": "collection date",
"value": "2011-02-20",
"unit": null
},
{
"key": "environment (biome)",
"value": "brackish",
"unit": null
},
{
"key": "environment (feature)",
"value": "lagoon",
"unit": null
},
{
"key": "environment (material)",
"value": "sediment",
"unit": null
},
{
"key": "environmental package",
"value": "sediment",
"unit": null
},
{
"key": "nucleic acid extraction",
"value": "http://www.mobio.com/soil-dna-isolation/ultraclean-soil-dna-isolation-kit.html",
"unit": null
},
{
"key": "target gene",
"value": "16S rRNA",
"unit": null
},
{
"key": "target subfragment",
"value": "V5-V6",
"unit": null
},
{
"key": "pcr primers",
"value": "GGATTAGATACCCBNGTA 802f; CGACRRCCATGCANCACCT 1027r",
"unit": null
},
{
"key": "multiplex identifiers",
"value": "AGACGCACTC Mid03",
"unit": null
},
{
"key": "pcr conditions",
"value": "initial denaturation: 95degC_5min; (denaturation= 98degC_20sec; annealing=55degC_15sec; extension= 72degC_30sec) for 25 cycles; final extension: 72degC_5min",
"unit": null
},
{
"key": "sequencing method",
"value": "pyrosequencing",
"unit": null
},
{
"key": "depth",
"value": "1.5",
"unit": null
},
{
"key": "elevation",
"value": "-1.5",
"unit": null
},
{
"key": "redox potential",
"value": "-124",
"unit": null
},
{
"key": "sample storage duration",
"value": "1",
"unit": null
},
{
"key": "geographic location (elevation)",
"value": "-1.5",
"unit": null
},
{
"key": "geographic location (latitude)",
"value": "39.045306",
"unit": null
},
{
"key": "particle classification",
"value": "3.46 % silt and clay; 96.54 % sand",
"unit": null
},
{
"key": "NCBI sample classification",
"value": "749907",
"unit": null
},
{
"key": "instrument model",
"value": "454 GS FLX Titanium",
"unit": null
},
{
"key": "ENA checklist",
"value": "ERC000011",
"unit": null
},
{
"key": "ENA-SUBMISSION-TOOL",
"value": "SRA-Webin",
"unit": null
}
],
"longitude": 20.7756,
"biosample": "SAMEA2039595",
"latitude": 39.0453,
"accession": "ERS187675",
"analysis-completed": "2017-02-13",
"collection-date": null,
"geo-loc-name": "Greece",
"sample-desc": "Station in the channel connecting the Tsopeli lagoon to the Amvrakikos Gulf (replicate B)",
"environment-biome": "brackish",
"environment-feature": "lagoon",
"environment-material": "sediment",
"sample-name": "TSOoutB",
"sample-alias": "TSOoutB",
"host-tax-id": null,
"species": null,
"last-update": "2024-01-23T14:56:21"
},
"relationships": {
"runs": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS187675/runs?format=api"
}
},
"studies": {
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS187675/studies?format=api"
},
"data": [
{
"type": "studies",
"id": "MGYS00001456",
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00001456?format=api"
}
}
]
},
"biome": {
"data": {
"type": "biomes",
"id": "root:Environmental:Aquatic:Marine:Coastal:Sediment"
},
"links": {
"related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Marine:Coastal:Sediment?format=api"
}
}
},
"links": {
"self": "https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS187675?format=api"
}
}
}