Sample Studies Relationship List

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            "type": "studies",
            "id": "MGYS00006280",
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                "accession": "MGYS00006280",
                "bioproject": "PRJEB50377",
                "samples-count": 84,
                "is-private": false,
                "last-update": "2023-08-14T20:33:07",
                "secondary-accession": "ERP134949",
                "centre-name": "Centre de Recherche Cardio-Thoracique de Bordeaux",
                "public-release-date": null,
                "study-abstract": "The aim of this study is to assess the link between gut microbiota composition and subsequent occurrence of ventilator-associated pneumonia in critically ill influenza patients. Every patient admitted to intensive care unit from October 2019 to March 2020 who received at least 2 days of invasive mechanical ventilation were included (ancillary study of Microbe study, NCT04131569). Rectal swabs were sampled and DNA extraction was performed by QIAamp® PowerFecal® Pro DNA kit (QIAgen®). V3-V4 regions of 16SRNA coding gene was amplified to analyse the bacterial kingdom of lung microbiota (bacteriobiota) and ITS2 to analyse the fungal kingdom (mycobiota). Sequencing (2x250bp paired-end reads) was performed on MiSeq sequencer (Illumina®) and DADA2 pipeline on R software was used for bioinformatics analyses.",
                "study-name": "gut microbiota and ventilator-associated pneumonia",
                "data-origination": "SUBMITTED"
            },
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