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"study-abstract": "The aim of the present study was to explore the biodiversity patterns of microorganismic assemblages and to examine whether these patterns are associated with those of the contextual environmental parameters. For this purpose, sediment samples were collected from five lagoons (Rodia, Tsoukalio, Tsopeli, Mazoma, Logarou), located in Amvrakikos Gulf (Ionian Sea, Western Greece). In each lagoon, two sampling stations were chosen, with different connectivity degree with the sea. A number of abiotic parameters were measured for every station, including the sediment concentrations of heavy metals and elements. Microbial DNA was extracted from the sediment upper layer (0-2cm) and was further processed through deep sequencing of the V5-V6 region of the 16S rRNA gene by next generation sequencing.",
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