Genome Instance

HTTP 200 OK
Allow: GET, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "data": {
        "type": "genomes",
        "id": "MGYG000326653",
        "attributes": {
            "genome-id": 20345,
            "geographic-range": [
                "North America",
                "Europe",
                "Asia"
            ],
            "geographic-origin": "Asia",
            "accession": "MGYG000326653",
            "ena-genome-accession": null,
            "ena-sample-accession": "SAMEA112144033",
            "ena-study-accession": "ERP142179",
            "ncbi-genome-accession": null,
            "ncbi-sample-accession": null,
            "ncbi-study-accession": null,
            "img-genome-accession": null,
            "patric-genome-accession": null,
            "length": 2223328,
            "num-contigs": 133,
            "n-50": 23858,
            "gc-content": 52.18,
            "type": "MAG",
            "completeness": 94.41,
            "contamination": 0.0,
            "busco-completeness": null,
            "rna-5s": 0.0,
            "rna-16s": 0.0,
            "rna-23s": 0.0,
            "rna-5-8s": null,
            "rna-18s": null,
            "rna-28s": null,
            "trnas": 17.0,
            "nc-rnas": 17,
            "num-proteins": 2079,
            "eggnog-coverage": 91.1,
            "ipr-coverage": 89.32,
            "taxon-lineage": "d__Bacteria;p__Bacillota_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__UBA866;s__",
            "num-genomes-total": 7,
            "pangenome-size": 2266,
            "pangenome-core-size": 659,
            "pangenome-accessory-size": 1607,
            "last-update": "2023-12-08T16:28:04.734785",
            "first-created": "2023-12-08T16:28:04.732232"
        },
        "relationships": {
            "catalogue": {
                "data": {
                    "type": "genome-catalogues",
                    "id": "mouse-gut-v1-0"
                },
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genome-catalogues/mouse-gut-v1-0?format=api"
                }
            },
            "downloads": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000326653/downloads?format=api"
                }
            },
            "biome": {
                "data": {
                    "type": "biomes",
                    "id": "root:Host-associated:Mammals:Digestive system:Large intestine:Fecal"
                },
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Host-associated:Mammals:Digestive%20system:Large%20intestine:Fecal?format=api"
                }
            },
            "antismash-geneclusters": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000326653/antismash-genecluster?format=api"
                }
            },
            "cog-matches": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000326653/cogs?format=api"
                }
            },
            "kegg-modules-matches": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000326653/kegg-module?format=api"
                }
            },
            "kegg-class-matches": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000326653/kegg-class?format=api"
                }
            }
        },
        "links": {
            "self": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000326653?format=api"
        }
    }
}