Genome Instance

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{
    "data": {
        "type": "genomes",
        "id": "MGYG000000653",
        "attributes": {
            "genome-id": 5963,
            "geographic-range": [
                "North America",
                "Europe",
                "Asia",
                "Oceania"
            ],
            "geographic-origin": "Europe",
            "accession": "MGYG000000653",
            "ena-genome-accession": null,
            "ena-sample-accession": "ERS1444690",
            "ena-study-accession": "ERP019502",
            "ncbi-genome-accession": null,
            "ncbi-sample-accession": null,
            "ncbi-study-accession": null,
            "img-genome-accession": null,
            "patric-genome-accession": null,
            "length": 2583563,
            "num-contigs": 29,
            "n-50": 151503,
            "gc-content": 45.63,
            "type": "MAG",
            "completeness": 99.62,
            "contamination": 0.0,
            "busco-completeness": null,
            "rna-5s": 0.0,
            "rna-16s": 0.0,
            "rna-23s": 99.38,
            "rna-5-8s": null,
            "rna-18s": null,
            "rna-28s": null,
            "trnas": 20.0,
            "nc-rnas": 28,
            "num-proteins": 2155,
            "eggnog-coverage": 93.69,
            "ipr-coverage": 89.65,
            "taxon-lineage": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA11471;g__UBA11471;s__UBA11471 sp000434215",
            "num-genomes-total": 210,
            "pangenome-size": 4443,
            "pangenome-core-size": 1152,
            "pangenome-accessory-size": 3291,
            "last-update": "2024-01-23T13:28:12.761043",
            "first-created": "2021-12-07T18:47:38.729794"
        },
        "relationships": {
            "downloads": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000000653/downloads?format=api"
                }
            },
            "catalogue": {
                "data": {
                    "type": "genome-catalogues",
                    "id": "human-gut-v2-0-2"
                },
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genome-catalogues/human-gut-v2-0-2?format=api"
                }
            },
            "kegg-modules-matches": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000000653/kegg-module?format=api"
                }
            },
            "kegg-class-matches": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000000653/kegg-class?format=api"
                }
            },
            "antismash-geneclusters": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000000653/antismash-genecluster?format=api"
                }
            },
            "cog-matches": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000000653/cogs?format=api"
                }
            },
            "biome": {
                "data": {
                    "type": "biomes",
                    "id": "root:Host-associated:Human:Digestive system:Large intestine"
                },
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Host-associated:Human:Digestive%20system:Large%20intestine?format=api"
                }
            }
        },
        "links": {
            "self": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000000653?format=api"
        }
    }
}