GET /metagenomics/api/v1/genomes/MGYG000000565?format=api
HTTP 200 OK
Allow: GET, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "data": {
        "type": "genomes",
        "id": "MGYG000000565",
        "attributes": {
            "genome-id": 4851,
            "geographic-range": [
                "Asia"
            ],
            "geographic-origin": "Asia",
            "accession": "MGYG000000565",
            "ena-genome-accession": null,
            "ena-sample-accession": "SRS1997022",
            "ena-study-accession": "SRP100575",
            "ncbi-genome-accession": null,
            "ncbi-sample-accession": null,
            "ncbi-study-accession": null,
            "img-genome-accession": null,
            "patric-genome-accession": null,
            "length": 2194949,
            "num-contigs": 182,
            "n-50": 18615,
            "gc-content": 60.26,
            "type": "MAG",
            "completeness": 98.39,
            "contamination": 0.81,
            "busco-completeness": null,
            "rna-5s": 0.0,
            "rna-16s": 0.0,
            "rna-23s": 0.0,
            "rna-5-8s": null,
            "rna-18s": null,
            "rna-28s": null,
            "trnas": 19.0,
            "nc-rnas": 16,
            "num-proteins": 1912,
            "eggnog-coverage": 91.95,
            "ipr-coverage": 90.27,
            "taxon-lineage": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella;s__Collinsella sp900545555",
            "num-genomes-total": 2,
            "pangenome-size": 1825,
            "pangenome-core-size": 1804,
            "pangenome-accessory-size": 21,
            "last-update": "2024-01-23T13:27:10.011670",
            "first-created": "2021-12-07T18:04:53.571653"
        },
        "relationships": {
            "cog-matches": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000000565/cogs?format=api"
                }
            },
            "antismash-geneclusters": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000000565/antismash-genecluster?format=api"
                }
            },
            "kegg-class-matches": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000000565/kegg-class?format=api"
                }
            },
            "kegg-modules-matches": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000000565/kegg-module?format=api"
                }
            },
            "downloads": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000000565/downloads?format=api"
                }
            },
            "biome": {
                "data": {
                    "type": "biomes",
                    "id": "root:Host-associated:Human:Digestive system:Large intestine"
                },
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Host-associated:Human:Digestive%20system:Large%20intestine?format=api"
                }
            },
            "catalogue": {
                "data": {
                    "type": "genome-catalogues",
                    "id": "human-gut-v2-0-2"
                },
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genome-catalogues/human-gut-v2-0-2?format=api"
                }
            }
        },
        "links": {
            "self": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000000565?format=api"
        }
    }
}