GET /metagenomics/api/v1/genomes/MGYG000000473?format=api
HTTP 200 OK
Allow: GET, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "data": {
        "type": "genomes",
        "id": "MGYG000000473",
        "attributes": {
            "genome-id": 6819,
            "geographic-range": [
                "Asia",
                "Oceania"
            ],
            "geographic-origin": "Oceania",
            "accession": "MGYG000000473",
            "ena-genome-accession": null,
            "ena-sample-accession": "SRS475986",
            "ena-study-accession": "SRP029441",
            "ncbi-genome-accession": null,
            "ncbi-sample-accession": null,
            "ncbi-study-accession": null,
            "img-genome-accession": null,
            "patric-genome-accession": null,
            "length": 1843328,
            "num-contigs": 163,
            "n-50": 19002,
            "gc-content": 45.69,
            "type": "MAG",
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            "contamination": 1.61,
            "busco-completeness": null,
            "rna-5s": 0.0,
            "rna-16s": 0.0,
            "rna-23s": 0.0,
            "rna-5-8s": null,
            "rna-18s": null,
            "rna-28s": null,
            "trnas": 17.0,
            "nc-rnas": 16,
            "num-proteins": 1614,
            "eggnog-coverage": 82.34,
            "ipr-coverage": 86.31,
            "taxon-lineage": "d__Bacteria;p__Firmicutes_A;c__Clostridia_A;o__Christensenellales;f__Borkfalkiaceae;g__UBA10281;s__UBA10281 sp900767495",
            "num-genomes-total": 6,
            "pangenome-size": 1910,
            "pangenome-core-size": 334,
            "pangenome-accessory-size": 1576,
            "last-update": "2024-01-23T13:28:48.260861",
            "first-created": "2021-12-07T19:13:45.653234"
        },
        "relationships": {
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                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000000473/downloads?format=api"
                }
            },
            "catalogue": {
                "data": {
                    "type": "genome-catalogues",
                    "id": "human-gut-v2-0-2"
                },
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genome-catalogues/human-gut-v2-0-2?format=api"
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            },
            "kegg-modules-matches": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000000473/kegg-module?format=api"
                }
            },
            "kegg-class-matches": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000000473/kegg-class?format=api"
                }
            },
            "antismash-geneclusters": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000000473/antismash-genecluster?format=api"
                }
            },
            "cog-matches": {
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000000473/cogs?format=api"
                }
            },
            "biome": {
                "data": {
                    "type": "biomes",
                    "id": "root:Host-associated:Human:Digestive system:Large intestine"
                },
                "links": {
                    "related": "https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Host-associated:Human:Digestive%20system:Large%20intestine?format=api"
                }
            }
        },
        "links": {
            "self": "https://www.ebi.ac.uk/metagenomics/api/v1/genomes/MGYG000000473?format=api"
        }
    }
}